View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_2 (Length: 607)
Name: NF16003_high_2
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 99 - 599
Target Start/End: Original strand, 28877233 - 28877731
Alignment:
| Q |
99 |
aaaaacagagtattttgtgattgtaagcatgatggattaagattattgagtagaatgtactaannnnnnnnnggtgtaacgtatgatattgtatttgatc |
198 |
Q |
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| T |
28877233 |
aaaaacagagtattttgtgattgtaagcatgatggattaagattattgagtagaatgtaatc-tgtttttttggtgtaatgtttgatattgtatttgatc |
28877331 |
T |
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| Q |
199 |
tttaatgtgtannnnnnnnnnnncaaatttgaatgattaatgtgaaaaagttttcacctttatctcannnnnnnctctgttttctgtttcnnnnnnnnnn |
298 |
Q |
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| T |
28877332 |
tttaatgggtatgttttcttattcaaatttgaataatga-tgtggaaaagttttcacctttatctcatttttttctctgttttctgtttcaaaaaaaata |
28877430 |
T |
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| Q |
299 |
nnnnnntacaatttttgcttcatggttttctcattattcttgtattggtttctgggatttcagataggtatggtattattctctgttgagttctcaaaat |
398 |
Q |
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| T |
28877431 |
aaaaatttcaatttttgcttcatggttttctcattattcttgtattggtttctgggatttcagataggtatggtattattctctgttgagttctcaaaat |
28877530 |
T |
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| Q |
399 |
ttgatacaaagaatgaagaaaatggaatttttctcaatggtttttagaaaaattaggtttaaaatgcattgggattagggttatttaatggttctatatt |
498 |
Q |
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| T |
28877531 |
ttgatacaaagaatgaagaaaatggaatttttctcaatggtttttagaaaaattaggtttaaaatgcattgggattagggttatttaatggttctatatt |
28877630 |
T |
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| Q |
499 |
ctgaattctgaatgttcacaatgcaacaggttttcattttcaaacaatgtgaatgtgaatactttattacttgtgctgcattattctttgagatctgtgc |
598 |
Q |
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| T |
28877631 |
ctgaattctgaatgttcacaatgcaacaagttttcattttcaaacaatgtgaatatgaatactttattacttgtgctgcattattctttgagatctgtgc |
28877730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 28877043 - 28877102
Alignment:
| Q |
99 |
aaaaacagagtattttgt-gattgtaagcatgatggattaagattattgagtagaatgta |
157 |
Q |
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|||||||||||||||| | ||||||||| ||| | |||||| |||||||||||||||||| |
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| T |
28877043 |
aaaaacagagtattttattgattgtaagtatgtttgattaaaattattgagtagaatgta |
28877102 |
T |
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