View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_21 (Length: 370)
Name: NF16003_high_21
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 25417358 - 25417057
Alignment:
| Q |
6 |
ctccgtctctgcttccgctccgttcgtgatcggtaaaggtatgcataaatcaaacttccaacattcagattctgcatacttcgttttcaatttttgcttt |
105 |
Q |
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| T |
25417358 |
ctccgtctctgcttccgctccgttcgtcatcggtaaaggtatgcataaatcaaactaccaacattcagattctgcatacttcgttttcaatttttgcttt |
25417259 |
T |
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| Q |
106 |
cgatgcttagatttataattatatttgctttaattatgtagtatatgctatgtgtcttttttgcaactttgaatttagatcgaaaatgttcactaaatgc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25417258 |
cgatgcttagatttataattatatttgctttaattatgtagtatatgctatgtgtcttttttgcaactttgaatttagatcgaaaatgttcactaaatgc |
25417159 |
T |
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| Q |
206 |
tgtcgaaatcaacctgtttaacaattctttaaagagtaaaccaccaaattcgtctttgactttgtaagatgctctcaaacaggttcctgatgttattaat |
305 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25417158 |
tgtccaaatcaacctgtttaacaattctttatagagtaaaccaccaaattcgtctttaactttgtaagatgctctcaaacaggttcctgatgttattaat |
25417059 |
T |
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| Q |
306 |
at |
307 |
Q |
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|| |
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| T |
25417058 |
at |
25417057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 11728997 - 11729050
Alignment:
| Q |
39 |
taaaggtatgcataaatcaaacttccaacattcagattctgcatacttcgtttt |
92 |
Q |
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| T |
11728997 |
taaaggtatgcataaatcaaacttccaacatacaggttctgcattctttgtttt |
11729050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 25417034 - 25416998
Alignment:
| Q |
322 |
gactctgtcaaattttacacatattagtcatttgaga |
358 |
Q |
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| T |
25417034 |
gactctgtcaaattttacacatattagtcatttgaga |
25416998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 25412029 - 25411971
Alignment:
| Q |
51 |
taaatcaaacttccaacattcagattctgcatacttcgttttcaatttttgctttcgat |
109 |
Q |
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| T |
25412029 |
taaatcaaacttccaagatacagattctacatactttgttttcaatttttccgttcgat |
25411971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 11730494 - 11730434
Alignment:
| Q |
39 |
taaaggtatgcataaatcaaacttccaacattcagattctgcatacttcgttttcaattttt |
100 |
Q |
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| T |
11730494 |
taaaggtatgcatatatcaaacttccaaca-taaaattctgcattctttattttcaattttt |
11730434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 9710037 - 9710081
Alignment:
| Q |
239 |
gagtaaaccaccaaattcgtctttgactttgtaagatgctctcaa |
283 |
Q |
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| T |
9710037 |
gagtaaaccaccaaattagtctctgactttgtaagacgctctcaa |
9710081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 52774688 - 52774738
Alignment:
| Q |
239 |
gagtaaaccaccaaattcgtctttgactttgtaagatgctctcaaacaggt |
289 |
Q |
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| T |
52774688 |
gagtaaaccaccaaatttgtctatgactttgtagggtgctctcaaataggt |
52774738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 1559445 - 1559485
Alignment:
| Q |
322 |
gactctgtcaaattttacacatattagtcatt-tgagaata |
361 |
Q |
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| T |
1559445 |
gactctgtcaaattttactcatattagtcattatgagaata |
1559485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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