View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_22 (Length: 366)
Name: NF16003_high_22
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 53942012 - 53942355
Alignment:
| Q |
16 |
atcgcttatgagaaggatgacgagacgaggaggtggcgcctcatg-aagaaggaggccaacatcagaagaagttacaagtttcgatatgaaatctgcaca |
114 |
Q |
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| T |
53942012 |
atcgcttatgagaaggatgacgagacgaggaggtggcgcttcatggaagaaggaggccaacatcagaagaagctacaagtttcgacatgaaatctgcaca |
53942111 |
T |
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| Q |
115 |
ttggttcccattaattttttaagtgtatgagaaaccgtaatgttactttgaaggtgcaaatattttatgtcttaaataagaaccacatagatatggtaac |
214 |
Q |
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| T |
53942112 |
ttggttccccttaattctttaagtgtatgagaaaccgtaatgttactttgaaggtgcaaatgttttatgtcttaaataagaaccacatagatatggtaac |
53942211 |
T |
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| Q |
215 |
agtcaatggggtcattaatcaaattaatgcaaacaggataatctgaaccatgatagatagnnnnnnnctcagcaaagcaagatatcat---------aaa |
305 |
Q |
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| T |
53942212 |
cgtcaatggggtcattaatcaaattaatgcaaacaggataatctgaaccatgatagatagaaaaaaactcagc-aagcaagatatcatctgaacctaaaa |
53942310 |
T |
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| Q |
306 |
tataccttgaaaaaccggcaagaaacaaactagaattatagcagg |
350 |
Q |
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| T |
53942311 |
tataccttgaaaaaccggcaagaaacaaactagaattatagcagg |
53942355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 53 - 257
Target Start/End: Original strand, 18888884 - 18889083
Alignment:
| Q |
53 |
gcctcatgaagaaggaggccaacatcagaagaagttacaagtttcgatatgaaatctgcacattggttcccattaattttttaagtgtatgagaaaccgt |
152 |
Q |
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| T |
18888884 |
gcctcacgaagaaggaggccaacatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatc-----tctaagcgtatgagaaaccgt |
18888978 |
T |
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| Q |
153 |
aatgttactttgaaggtgcaaatattttatgtcttaaataagaaccacatagatatggtaacagtcaatggggtcattaatcaaattaatgcaaacagga |
252 |
Q |
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| T |
18888979 |
gatattactttgaagaagcaaattttttatgtattgaataagggccacatagacatggtacctctcaatggagccattaatcaaattaatgcaaacaaga |
18889078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 18889183 - 18889223
Alignment:
| Q |
304 |
aatataccttgaaaaaccggcaagaaacaaactagaattat |
344 |
Q |
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| T |
18889183 |
aatataccctgaaaaaccggctagaaagaaactagaattat |
18889223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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