View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_31 (Length: 339)
Name: NF16003_high_31
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 54494182 - 54494496
Alignment:
| Q |
10 |
attatactgcattaaattggattggaataagttttttaaatgagtgatccaaactgaatccaaccataggtgattttgtctttgaatcagaattaccaaa |
109 |
Q |
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| T |
54494182 |
attacactgcattaaattggattggaataagttttttaaatgagtgatccaaactgaatccaaccataggtgattttgtctttgaatcagaattgccaaa |
54494281 |
T |
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| Q |
110 |
atcgcacctcgaacactactagcagaaagctttcccaactattgtcataactatgaagcttctcttcaatgaaagcatcctcacccaatgacaatttctt |
209 |
Q |
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| T |
54494282 |
atcgcacctcgaacactactagcagaaagctttcccaactattgtcataactatgaagcttctcttcaatgaaagcatcctcacccaatgacaatttctt |
54494381 |
T |
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| Q |
210 |
gtcaccgtgtctacaagtaaacaatgtcatcacctctcataatctatcgtgtagtcgacagaatctctaagaagtatcacaaatggcatctatgtacatt |
309 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
54494382 |
gtcaccgagtctacaagtaaacaatgccatcacctctcataatctatcgtgtagtcgacagaatctctaagaagtatcgcaaatggcatctatgtacatt |
54494481 |
T |
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| Q |
310 |
atctaatggtgttct |
324 |
Q |
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||||||||||||||| |
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| T |
54494482 |
atctaatggtgttct |
54494496 |
T |
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