View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_high_33 (Length: 337)

Name: NF16003_high_33
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_high_33
NF16003_high_33
[»] chr3 (4 HSPs)
chr3 (14-251)||(2472505-2472742)
chr3 (53-192)||(4734388-4734528)
chr3 (51-184)||(38316107-38316245)
chr3 (195-240)||(365590-365635)
[»] chr4 (4 HSPs)
chr4 (198-251)||(40206184-40206237)
chr4 (199-235)||(7723665-7723701)
chr4 (198-246)||(13991380-13991427)
chr4 (198-238)||(24667705-24667745)
[»] chr8 (5 HSPs)
chr8 (198-240)||(18180713-18180755)
chr8 (197-246)||(24731268-24731317)
chr8 (198-246)||(2189722-2189770)
chr8 (197-246)||(26378041-26378090)
chr8 (210-244)||(31072133-31072167)
[»] chr6 (3 HSPs)
chr6 (198-246)||(27822118-27822166)
chr6 (199-251)||(18718201-18718253)
chr6 (195-238)||(29342072-29342116)
[»] chr2 (6 HSPs)
chr2 (198-246)||(33051659-33051707)
chr2 (198-246)||(36647333-36647381)
chr2 (198-238)||(15129438-15129478)
chr2 (214-246)||(28737878-28737910)
chr2 (198-247)||(1518232-1518281)
chr2 (198-238)||(33655676-33655716)
[»] chr7 (3 HSPs)
chr7 (211-248)||(30217852-30217889)
chr7 (211-246)||(5934645-5934680)
chr7 (206-235)||(11717044-11717073)
[»] chr1 (8 HSPs)
chr1 (197-246)||(12944157-12944206)
chr1 (211-246)||(10925778-10925813)
chr1 (196-251)||(36694152-36694207)
chr1 (196-251)||(36710253-36710308)
chr1 (197-246)||(8931260-8931310)
chr1 (211-244)||(28661081-28661114)
chr1 (198-246)||(43681503-43681552)
chr1 (198-246)||(40058102-40058150)
[»] chr5 (1 HSPs)
chr5 (196-246)||(8456378-8456427)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 2472505 - 2472742
Alignment:
Q  14 ttattgtcgtaccgcgagttgccatttaaannnnnnnactagcatccaataattgtatcttttatatttttcgttttataacttcatggatgttaaaagt 113  Q
    ||||||| |||||||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472505 ttattgttgtaccgcgtgttgccatttaattttttttactagcatccaataattgtatcttttatatttttcgttttataacttcatggatgttaaaagt 2472604  T
Q  114 atgactctacactcaaagatgttgataataaaatgaaattaggcactaaataatattataattgaattgtgtcgtatctcttattgacgcagtacgaaag 213  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472605 atgactctacattcagagatgttgataataaaatgaaattaggcactaaataatattataattgaattgtgtcgtatctcttattgacgcagtacgaaag 2472704  T
Q  214 cgtaggctagcaagcgctaaacctaaattgaaagagac 251  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2472705 cgtaggctagcaagcgctaaacctaaattgaaagagac 2472742  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 53 - 192
Target Start/End: Complemental strand, 4734528 - 4734388
Alignment:
Q  53 tagcatccaataattgtatcttttatattttt-cgttttataacttcatggatgttaaaagtatgactctacactcaaagatgttgataataaaatgaaa 151  Q
    |||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  4734528 tagcatccaataattgtatcttttattttttttctttttacaacttcatggatgttgaaactatgactctacactcaaagatgttgataataaaatgaaa 4734429  T
Q  152 ttaggcactaaataatattataattgaattgtgtcgtatct 192  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  4734428 ttaggcactaaataatattataactgaattgtgtcttatct 4734388  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 38316107 - 38316245
Alignment:
Q  51 actagcatccaataattgtatcttttatatttttcgtttt-ataacttcatggatgttaaaagtatgactctac----actcaaagatgttgataataaa 145  Q
    ||||| ||||||||||| |||||||||||||||| ||||| |||||||||| |||||| | | || |||||||     | || |||||||||||||||||    
T  38316107 actaggatccaataattatatcttttatattttttgtttttataacttcatcgatgttgagattacgactctatctatagtctaagatgttgataataaa 38316206  T
Q  146 atgaaattaggcactaaataatattataattgaattgtg 184  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  38316207 atgaaataaggcattaaataatattataattgaattgtg 38316245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 365590 - 365635
Alignment:
Q  195 tattgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaa 240  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||    
T  365590 tattgacgcattacggaagcgtaggctagcaaacgctaaacctaaa 365635  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 40206237 - 40206184
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagac 251  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  40206237 tgacgcactacggaagcgtaggctagcaagcgctaaatctaaattgaaagagac 40206184  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 7723665 - 7723701
Alignment:
Q  199 gacgcagtacgaaagcgtaggctagcaagcgctaaac 235  Q
    ||||||||||  |||||||||||||||||||||||||    
T  7723665 gacgcagtacagaagcgtaggctagcaagcgctaaac 7723701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 13991380 - 13991427
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||||    
T  13991380 tgacgcagt-cggaagcgtaggctagcaagcgctaaatctagattgaaa 13991427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 24667745 - 24667705
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaaccta 238  Q
    |||||||||| | ||||||||||||||||||| ||||||||    
T  24667745 tgacgcagtatggaagcgtaggctagcaagcgttaaaccta 24667705  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 18180713 - 18180755
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaa 240  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  18180713 tgacgcagtacggaagcgtaggctagcaagcgctaaacctaaa 18180755  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 24731317 - 24731268
Alignment:
Q  197 ttgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  24731317 ttgacgcagtacgggagcgtaggctagcaagcgctaaacctagattgaaa 24731268  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 2189722 - 2189770
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||| |||||||||||||||||||||||||||  |||||||    
T  2189722 tgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaa 2189770  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 26378090 - 26378041
Alignment:
Q  197 ttgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||| |||||| |||||||||||||||||||||||| ||| |||||||    
T  26378090 ttgacgtagtacggaagcgtaggctagcaagcgctaaatctagattgaaa 26378041  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 31072133 - 31072167
Alignment:
Q  210 aaagcgtaggctagcaagcgctaaacctaaattga 244  Q
    ||||||||||||||||||||||||||||| |||||    
T  31072133 aaagcgtaggctagcaagcgctaaacctagattga 31072167  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 27822118 - 27822166
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||| |||||||||||||||| |||||||||||||| ||||    
T  27822118 tgacgcagtacggaagcgtaggctagcaaacgctaaacctaaatagaaa 27822166  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 18718201 - 18718253
Alignment:
Q  199 gacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagac 251  Q
    ||||||||||  ||| |||||||||||||||||||||||| ||||||| ||||    
T  18718201 gacgcagtacagaagtgtaggctagcaagcgctaaacctagattgaaaaagac 18718253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 29342116 - 29342072
Alignment:
Q  195 tattgacgcagtacgaaagcgta-ggctagcaagcgctaaaccta 238  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||    
T  29342116 tattgacgcagtacggaagcgtagggttagcaagcgctaaaccta 29342072  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 33051707 - 33051659
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||||    
T  33051707 tgacgtagtacggaagcttaggctagcaagcgctaaacctaaattgaaa 33051659  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 36647381 - 36647333
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||| |||||||||||||||||||||||||||  |||||||    
T  36647381 tgacgcagtacggaagcgtaggctagcaagcgctaaacctcgattgaaa 36647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 15129478 - 15129438
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaaccta 238  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  15129478 tgacgtagtacggaagcgtaggctagcaagcgctaaaccta 15129438  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 28737910 - 28737878
Alignment:
Q  214 cgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  28737910 cgtaggctagcaagcgctaaacctaaattgaaa 28737878  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 1518281 - 1518232
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaag 247  Q
    |||||||||||| |||||||  |||||||||||| |||||| ||||||||    
T  1518281 tgacgcagtacggaagcgtatcctagcaagcgcttaacctagattgaaag 1518232  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 33655716 - 33655676
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaaccta 238  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  33655716 tgacgcagtacggaagtgtaggttagcaagcgctaaaccta 33655676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 30217889 - 30217852
Alignment:
Q  211 aagcgtaggctagcaagcgctaaacctaaattgaaaga 248  Q
    |||||||||||||||||||||||||||| |||||||||    
T  30217889 aagcgtaggctagcaagcgctaaacctagattgaaaga 30217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 5934680 - 5934645
Alignment:
Q  211 aagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||||||||||||||||||| |||||||    
T  5934680 aagcgtaggctagcaagcgctaaacctagattgaaa 5934645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 11717073 - 11717044
Alignment:
Q  206 tacgaaagcgtaggctagcaagcgctaaac 235  Q
    ||||||||||||||||||||||||||||||    
T  11717073 tacgaaagcgtaggctagcaagcgctaaac 11717044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 12944206 - 12944157
Alignment:
Q  197 ttgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    ||||||||  |||||||||||||||||||||||||||| ||| |||||||    
T  12944206 ttgacgcaacacgaaagcgtaggctagcaagcgctaaatctagattgaaa 12944157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 10925813 - 10925778
Alignment:
Q  211 aagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10925813 aagcggaggctagcaagcgctaaacctaaattgaaa 10925778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 36694152 - 36694207
Alignment:
Q  196 attgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagac 251  Q
    |||||||||||||| ||  |||| |||||||||||||||| || ||||||||||||    
T  36694152 attgacgcagtacggaattgtagactagcaagcgctaaacttagattgaaagagac 36694207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 36710253 - 36710308
Alignment:
Q  196 attgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaagagac 251  Q
    |||||||||||||| ||  |||| |||||||||||||||| || ||||||||||||    
T  36710253 attgacgcagtacggaattgtagactagcaagcgctaaacttagattgaaagagac 36710308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 8931310 - 8931260
Alignment:
Q  197 ttgacgcagtacgaaagcgtaggct-agcaagcgctaaacctaaattgaaa 246  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| |||||||    
T  8931310 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaa 8931260  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 28661081 - 28661114
Alignment:
Q  211 aagcgtaggctagcaagcgctaaacctaaattga 244  Q
    ||||||||||||||||| ||||||||||||||||    
T  28661081 aagcgtaggctagcaagtgctaaacctaaattga 28661114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 43681552 - 43681503
Alignment:
Q  198 tgacgcagtacgaaag-cgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||||||||||||  |||| |||||||||||||||||||| |||||||    
T  43681552 tgacgcagtacgaaaaacgtatgctagcaagcgctaaacctagattgaaa 43681503  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 40058102 - 40058150
Alignment:
Q  198 tgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    |||||| ||||| ||||||||||||||||||  ||||||||||| ||||    
T  40058102 tgacgcggtacggaagcgtaggctagcaagcagtaaacctaaatagaaa 40058150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 8456378 - 8456427
Alignment:
Q  196 attgacgcagtacgaaagcgtaggctagcaagcgctaaacctaaattgaaa 246  Q
    ||||||||||| || ||||||||| |||||||||||||||||| |||||||    
T  8456378 attgacgcagt-cggaagcgtagggtagcaagcgctaaacctagattgaaa 8456427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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