View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_high_38 (Length: 301)

Name: NF16003_high_38
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_high_38
NF16003_high_38
[»] chr4 (11 HSPs)
chr4 (1-301)||(55173525-55173826)
chr4 (1-79)||(39161285-39161363)
chr4 (1-74)||(50509400-50509473)
chr4 (1-74)||(39161559-39161632)
chr4 (1-74)||(47096802-47096874)
chr4 (1-74)||(47097069-47097142)
chr4 (7-74)||(55173336-55173403)
chr4 (27-74)||(2623449-2623496)
chr4 (1-73)||(37996068-37996140)
chr4 (3-58)||(9738136-9738191)
chr4 (3-58)||(9738956-9739011)
[»] chr8 (11 HSPs)
chr8 (1-74)||(13884491-13884564)
chr8 (1-74)||(13884760-13884833)
chr8 (1-74)||(29714544-29714617)
chr8 (1-74)||(42126656-42126729)
chr8 (1-79)||(42126379-42126457)
chr8 (1-67)||(2554122-2554188)
chr8 (1-79)||(11867954-11868031)
chr8 (1-66)||(29714814-29714879)
chr8 (1-74)||(43416265-43416338)
chr8 (3-58)||(26746012-26746067)
chr8 (3-58)||(26745281-26745336)
[»] chr1 (10 HSPs)
chr1 (1-79)||(37189620-37189698)
chr1 (1-74)||(10824641-10824714)
chr1 (1-74)||(22683143-22683216)
chr1 (1-74)||(15825793-15825864)
chr1 (1-74)||(19056423-19056496)
chr1 (1-74)||(37189370-37189442)
chr1 (1-74)||(18844720-18844794)
chr1 (1-74)||(18844461-18844534)
chr1 (1-74)||(19056152-19056225)
chr1 (1-64)||(10824380-10824443)
[»] scaffold0781 (1 HSPs)
scaffold0781 (1-74)||(5307-5380)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-74)||(22977-23050)
[»] chr6 (11 HSPs)
chr6 (1-74)||(2216850-2216923)
chr6 (1-74)||(24690357-24690430)
chr6 (1-79)||(11644019-11644098)
chr6 (1-77)||(24690618-24690694)
chr6 (1-71)||(11643754-11643824)
chr6 (1-79)||(24798894-24798972)
chr6 (1-74)||(24798627-24798700)
chr6 (4-74)||(18494736-18494805)
chr6 (3-58)||(9955643-9955698)
chr6 (1-74)||(18495004-18495077)
chr6 (3-58)||(9954825-9954880)
[»] chr7 (14 HSPs)
chr7 (1-79)||(28715914-28715992)
chr7 (1-79)||(30862215-30862293)
chr7 (8-74)||(41985912-41985978)
chr7 (4-74)||(41986183-41986253)
chr7 (1-59)||(47373734-47373792)
chr7 (11-79)||(6474562-6474630)
chr7 (1-74)||(6474282-6474355)
chr7 (1-73)||(28715645-28715717)
chr7 (22-79)||(22226665-22226722)
chr7 (1-74)||(47373464-47373539)
chr7 (3-58)||(38408174-38408229)
chr7 (1-73)||(30862492-30862564)
chr7 (3-58)||(6271241-6271296)
chr7 (3-58)||(38407450-38407505)
[»] chr3 (11 HSPs)
chr3 (1-74)||(51663522-51663595)
chr3 (1-74)||(40244627-40244700)
chr3 (1-77)||(46003520-46003596)
chr3 (1-74)||(20538206-20538279)
chr3 (14-74)||(40244873-40244933)
chr3 (1-73)||(40364229-40364301)
chr3 (1-73)||(46003251-46003323)
chr3 (1-74)||(51663252-51663325)
chr3 (1-74)||(40364043-40364116)
chr3 (1-72)||(20537930-20538001)
chr3 (15-61)||(48867490-48867536)
[»] chr2 (16 HSPs)
chr2 (1-74)||(16973066-16973139)
chr2 (1-74)||(2916380-2916453)
chr2 (1-74)||(40987659-40987732)
chr2 (1-74)||(44594510-44594583)
chr2 (8-74)||(16973343-16973409)
chr2 (1-74)||(44594250-44594324)
chr2 (1-74)||(13559573-13559646)
chr2 (1-74)||(11533717-11533790)
chr2 (9-74)||(24125672-24125737)
chr2 (1-74)||(38982559-38982632)
chr2 (1-73)||(38982829-38982901)
chr2 (3-55)||(2916651-2916703)
chr2 (7-70)||(40987924-40987987)
chr2 (1-51)||(24126195-24126245)
chr2 (1-51)||(24125925-24125975)
chr2 (3-58)||(34826709-34826764)
[»] chr5 (3 HSPs)
chr5 (1-74)||(21249364-21249437)
chr5 (25-75)||(21249629-21249679)
chr5 (13-62)||(15857676-15857725)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-59)||(61095-61151)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 55173525 - 55173826
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaannnnnnnnnnnn-atagcaga 99  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||             ||||||||    
T  55173525 aattggtacaaattatagttaggagatcaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaatttttttttttttatagcaga 55173624  T
Q  100 catcagagctcttccattccaccaaatatgtttctctcaagaatactaaaataacttttcttaggtaataatattctgtttctgttgctttttggcaatt 199  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55173625 tatcagagctcttccattccaccaaatatgtttctctcaagaatactaaaataacttttcttaggtaataatattctgtttctgttgctttttggcaatt 55173724  T
Q  200 caattgaagtagtgtttgaacacagtctaaactttaaatactaatcaaaccttaattatgcgatttgattattcagcaaccaatatgtttgttttctttc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55173725 caattgaagtagtgtttgaacacagtctaaactttaaatactaatcaaaccttaattatgcgatttgattattcagcaaccaatatgtttgttttctttc 55173824  T
Q  300 aa 301  Q
    ||    
T  55173825 aa 55173826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 39161363 - 39161285
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||    
T  39161363 aattggtacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagcctaa 39161285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50509400 - 50509473
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||    
T  50509400 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatgattgaataag 50509473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39161559 - 39161632
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| || |||||||||    
T  39161559 aattggtacaaattatagttaggggaccaaattaaaacaatcaattaagttaaggaaccggatggttgaataag 39161632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47096874 - 47096802
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  47096874 aattggtacaaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataag 47096802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 47097069 - 47097142
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||| ||||||||||||    
T  47097069 aattggtacaaattatagttagaggactaaattgagacaatcaattaagttaagagatcggatgattgaataag 47097142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 55173403 - 55173336
Alignment:
Q  7 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||    
T  55173403 tacaaattatagttaggggaccaaattaagacaatcaattaagttaaggaaccggatgatcgaataag 55173336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 2623449 - 2623496
Alignment:
Q  27 ccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggaccgagtgattgaataag 2623496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37996140 - 37996068
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||| ||||||||||||||| ||||||||||||| ||||||| || | |||||||| | |||||||||||||    
T  37996140 aattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 9738191 - 9738136
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||||||    
T  9738191 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 9738956 - 9739011
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||| |||| |||| ||||||||||||    
T  9738956 ttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaagggac 9739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13884564 - 13884491
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13884564 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 13884491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13884760 - 13884833
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13884760 aattggtacaaattatagttaggggactaaattgagacaatcaattaagttaagggaccgggtgattgaataag 13884833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29714617 - 29714544
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29714617 aattggtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 29714544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42126656 - 42126729
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  42126656 aattggtacaaattatagttaggggatcaaattgagataatcaattaagttaagggaccgggtgattgaataag 42126729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 42126457 - 42126379
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||| |||||||||||||||| | | |||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  42126457 aattgatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagcctaa 42126379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2554122 - 2554188
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgatt 67  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  2554122 aattggaacaaattatagttaggggatcaaattgagacaatcaattaagttaagggactaggtgatt 2554188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11867954 - 11868031
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  11867954 aattgatacaaattatagttaaggaaccaaattgagacaatcaattaagttaa-ggaccaggtgattgaataagcctaa 11868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29714814 - 29714879
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgat 66  Q
    ||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||||    
T  29714814 aattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtgat 29714879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43416338 - 43416265
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||||  ||||| |||||||||||||||||||| |||||  ||||||||||||    
T  43416338 aattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataag 43416265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 26746012 - 26746067
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||| |||| ||| |||||||||||||    
T  26746012 ttggtacaaattatatttaggggaccaatttgatacaaacaaataagttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 26745336 - 26745281
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| ||   |||| |||||||||||||||||    
T  26745336 ttggtacaaattatatttaggggaccaatttagtacaaacaattaagttaagggac 26745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 37189620 - 37189698
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37189620 aattggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggaccaggtgattgaataagtctaa 37189698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10824641 - 10824714
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10824641 aattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataag 10824714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22683216 - 22683143
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  22683216 aattgatacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataag 22683143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15825793 - 15825864
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15825793 aattggtacaaattatagttagg--accaaattgagacaatcaattaagttaagagaccgggtgattgaataag 15825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19056423 - 19056496
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||    
T  19056423 aattggtacagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataag 19056496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37189442 - 37189370
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37189442 aattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaa-ggaccgggtgattgaataag 37189370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18844720 - 18844794
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18844720 aattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggtgattgaataag 18844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18844534 - 18844461
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||| |||||||||    
T  18844534 aattgatacaaattatagttaggggaccaaattgagataatcaattaagttaagggaccatgtggttgaataag 18844461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19056225 - 19056152
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||    
T  19056225 aattgatacaaattataattaggggaccaaattaatacaatcaattaagttaagggatcaggtgattgaataag 19056152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10824443 - 10824380
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtg 64  Q
    ||||| ||||||||||| ||||||||||||||||  | ||||||||||||||| ||||||||||    
T  10824443 aattgatacaaattataattaggggaccaaattgcaataatcaattaagttaaaggaccgggtg 10824380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5307 - 5380
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5307 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataag 5380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22977 - 23050
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22977 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataag 23050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2216850 - 2216923
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2216850 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataag 2216923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24690430 - 24690357
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24690430 aattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataag 24690357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11644019 - 11644098
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11644019 aattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcctaa 11644098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 24690618 - 24690694
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtct 77  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  24690618 aattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataagtct 24690694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11643824 - 11643754
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaat 71  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  11643824 aattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24798894 - 24798972
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||||||| ||||    
T  24798894 aattgatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagcctaa 24798972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24798700 - 24798627
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||  | ||||||||||    
T  24798700 aattggtacaaattatagtcaggggaccaaattgaaacaaccaattaagttaagggaccgaataattgaataag 24798627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 18494805 - 18494736
Alignment:
Q  4 tggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||  |||||||||||||    
T  18494805 tggtacaaattatagctaggg-accaaattgagacaatcaataaagttaagggaccatgtgattgaataag 18494736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 9955643 - 9955698
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||    
T  9955643 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18495004 - 18495077
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||| |||| |||||| | | ||||||||||||||||||||  | ||||||||||||    
T  18495004 aattgatacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataag 18495077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 9954880 - 9954825
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||  |||| |||||||||||||||||    
T  9954880 ttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28715914 - 28715992
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  28715914 aattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtaattgaataagcctaa 28715992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30862293 - 30862215
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| ||||    
T  30862293 aattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatgattgaataagcctaa 30862215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 41985978 - 41985912
Alignment:
Q  8 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  41985978 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggactgggtgattgaataag 41985912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 41986183 - 41986253
Alignment:
Q  4 tggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataag 41986253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47373734 - 47373792
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggacc 59  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47373734 aattggtacaaattataattaggggaccaaattgagacaatcaattaagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 6474562 - 6474630
Alignment:
Q  11 aattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  6474562 aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagcctaa 6474630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6474355 - 6474282
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||    
T  6474355 aattgatataaattatagttaggggatcaaattgagacaatcaattaagttaagggatccggtaattgaataag 6474282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 28715717 - 28715645
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||| |||||||||||||||||  |||||||| | ||||| |||||||||||||||||||||||||||||||    
T  28715717 aattgatacaaattatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataa 28715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 22226665 - 22226722
Alignment:
Q  22 ggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtctaa 79  Q
    |||||||||||||||||||||||||||| ||||||| | |||||||||||||| ||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagcctaa 22226722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 47373539 - 47373464
Alignment:
Q  1 aattggtacaaattatag--ttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||   |||| ||| ||||||||||||||||||||||||||| || || |||||||||||||    
T  47373539 aattggtacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataag 47373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 38408174 - 38408229
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||    
T  38408174 ttggtacaaattatatttaggggaccaatttgatacaaacaattaagttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30862492 - 30862564
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||| | ||||||||||   |||||||||||    
T  30862492 aattgatacaaattatagttagggaacaaaattgaaacaatcaattcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 6271241 - 6271296
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||  | || |||||||||||||||||    
T  6271241 ttggtacaaattatatttaggggaccaatttggtagaaacaattaagttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 38407505 - 38407450
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||||| |||||||||||| |||  |||| | |||||||||||||||    
T  38407505 ttggtacaaattatatttaggggaccaatttggtacaaaccattaagttaagggac 38407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 51663522 - 51663595
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51663522 aattgctacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataag 51663595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40244700 - 40244627
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  40244700 aattggtacaaattatagttaagggaccaaattgagacaatcaattaagttaagggatcggatgattgaataag 40244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46003520 - 46003596
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagtct 77  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  46003520 aattggtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggaccagatgattaaataagtct 46003596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20538206 - 20538279
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  20538206 aattgatacaaattatagttaggggatcaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 20538279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 40244873 - 40244933
Alignment:
Q  14 tatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataag 40244933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40364229 - 40364301
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  40364229 aattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtgattgaataa 40364301  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 46003323 - 46003251
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  46003323 aattgatacaaattatagttaggggaccaaattaaaacaatcaattaagttaaaggaccgggtgattgaataa 46003251  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51663325 - 51663252
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| |||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||||||| ||||||    
T  51663325 aattgatacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataag 51663252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40364116 - 40364043
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||| ||| ||||||||||| ||| |||||||||||||||||||  ||||||| |||||||    
T  40364116 aattgatacaaattataattatgggaccaaattaagataatcaattaagttaagggattgggtgatcgaataag 40364043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 20538001 - 20537930
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaata 72  Q
    |||||| ||||||||||||||||||| |||||||| |  |||||||||||||||||||| | ||||| ||||    
T  20538001 aattggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggaccagatgattcaata 20537930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 48867490 - 48867536
Alignment:
Q  15 atagttaggggaccaaattgagacaatcaattaagttaagggaccgg 61  Q
    ||||||| ||||||||||||||| ||| || ||||||||||||||||    
T  48867490 atagttaagggaccaaattgagaaaataaaataagttaagggaccgg 48867536  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16973139 - 16973066
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16973139 aattggtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataag 16973066  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2916453 - 2916380
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  2916453 aattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataag 2916380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40987732 - 40987659
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  40987732 aattggtacaaattatagttagggaaccaaattgagacaatcaattaagttaagggaccggatgattaaataag 40987659  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44594510 - 44594583
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  44594510 aattgatacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 16973343 - 16973409
Alignment:
Q  8 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  16973343 acaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccatgtgattgaataag 16973409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 44594324 - 44594250
Alignment:
Q  1 aattggtacaaattatagttagggg-accaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44594324 aattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 44594250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 13559573 - 13559646
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  13559573 aattgatacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataag 13559646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 11533717 - 11533790
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| | ||||||||||||    
T  11533717 aattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgatgattgaataag 11533790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 24125737 - 24125672
Alignment:
Q  9 caaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataag 24125672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38982632 - 38982559
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  38982632 aattggtacaaattatagttagggagccaaattgagacaatcaattaagttaaaggatcgggtgattgattaag 38982559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38982829 - 38982901
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataa 73  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  38982829 aattgatacaaattatagttaagggaccaaattgagacaatcaattaagttaagggacttggtgactgaataa 38982901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 2916651 - 2916703
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagg 55  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2916651 ttggtacaaataatagttaggggaccaaattgagacaatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 40987924 - 40987987
Alignment:
Q  7 tacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaa 70  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||    
T  40987924 tacaaattatagttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24126195 - 24126245
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 51  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  24126195 aattggtacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24125925 - 24125975
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagtt 51  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  24125925 aattggtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 34826709 - 34826764
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggac 58  Q
    ||||||||||||| | ||| |||||||| |||| |||| |||||||||||||||||    
T  34826709 ttggtacaaattaaatttacgggaccaatttgatacaaacaattaagttaagggac 34826764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 21249437 - 21249364
Alignment:
Q  1 aattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataag 74  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  21249437 aattggtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataag 21249364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 21249629 - 21249679
Alignment:
Q  25 gaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagt 75  Q
    ||||||||| ||||||||||||||||||||||||  | |||||||||||||    
T  21249629 gaccaaattaagacaatcaattaagttaagggacaagatgattgaataagt 21249679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 15857676 - 15857725
Alignment:
Q  13 ttatagttaggggaccaaattgagacaatcaattaagttaagggaccggg 62  Q
    ||||||||| ||||||||| ||||| ||| || |||||||||||||||||    
T  15857676 ttatagttaagggaccaaactgagaaaataaaataagttaagggaccggg 15857725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 61095 - 61151
Alignment:
Q  3 ttggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggacc 59  Q
    ||||||||||||| | ||| |||||||| |||  |||| ||||||||||||||||||    
T  61095 ttggtacaaattaaatttaagggaccaatttggtacaaacaattaagttaagggacc 61151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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