View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_40 (Length: 296)
Name: NF16003_high_40
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 62 - 290
Target Start/End: Original strand, 3911343 - 3911571
Alignment:
| Q |
62 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
161 |
Q |
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| T |
3911343 |
tgtttctgcagagtttgcaggtttttagcagaaatggtggcagatggttttttaactttacatgtgaaattattttttgctctcatttttctttggtgct |
3911442 |
T |
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| Q |
162 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911443 |
agctagtagctatgttatgtttgtatggcagaaacaatgatgtgattgaacatctaaagcttattattattattactcattcataataatttcagaagct |
3911542 |
T |
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| Q |
262 |
ttgaaaatccaactctttcttcatctcac |
290 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
3911543 |
ttgaaaatccaactctttcttcatttcac |
3911571 |
T |
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