View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16003_high_43 (Length: 290)
Name: NF16003_high_43
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_43 |
 | |
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| [»] chr7 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 40452362 - 40452098
Alignment:
| Q |
26 |
gtcggtaggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatct |
125 |
Q |
| |
|
|||||| ||||||||||||||||| | || ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
40452362 |
gtcggtgggtgtggaaatttagagcctgcagattatcttttcattggctgcaacatttttgggagtgtttggtatttgatttgtaattggcttggcatct |
40452263 |
T |
|
| Q |
126 |
catatgttccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggct |
225 |
Q |
| |
|
|||||||| ||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
40452262 |
catatgtttctttaggattggtaactaatcactttttacagtttactaatttggcgggtatgccgagatcttcccatttttattttaaggtgatttggct |
40452163 |
T |
|
| Q |
226 |
cgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40452162 |
cgcttctatttgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
40452098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 290
Target Start/End: Complemental strand, 41242693 - 41242436
Alignment:
| Q |
33 |
ggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatctcatatgt |
132 |
Q |
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|
|||||||||| | ||||| |||||||||||||| |||| || ||| ||||||| |||||| |||| || ||||||||||||||||||| | ||||| |
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| T |
41242693 |
ggtgtggaaacattgagacagcggatcatctttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgt |
41242594 |
T |
|
| Q |
133 |
tccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggctcgctttt |
232 |
Q |
| |
|
||||||| | | | | ||| ||||| | ||||||| || ||||| |||||| ||||| ||| ||| || ||| ||||||||||||||||||| | |
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| T |
41242593 |
tccttcatgtcagctttctgatcactttctgcagtttagcaacatggcgagtatgccgagattttctcatacttttttcaaggtgatttggctcgcttct |
41242494 |
T |
|
| Q |
233 |
attcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
|| | ||||||||||| | ||| || |||||| | |||||||||||||||||||||| |
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|
| T |
41242493 |
atatgggcaatttggaaggatcgaaataactgtatattcaaaaatgcggtaatagatc |
41242436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 17263095 - 17263203
Alignment:
| Q |
182 |
ggtatgctgagatcttcccatttttattttaaggtgatttggctcgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcgg |
281 |
Q |
| |
|
||||||| |||| || | ||| ||||||||||||| |||||||| |||| | | | ||||| ||||| | | | ||||||||||| || |||||||||| |
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|
| T |
17263095 |
ggtatgccgagagctgctcatctttattttaaggtcatttggcttgcttgtgcttgggcaatatggaaggatagaaacaactgtgtattaaaaaatgcgg |
17263194 |
T |
|
| Q |
282 |
taatagatc |
290 |
Q |
| |
|
|||| |||| |
|
|
| T |
17263195 |
taatcgatc |
17263203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 22359052 - 22358972
Alignment:
| Q |
195 |
cttcccatttttattttaaggtgatttggctcgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaa |
275 |
Q |
| |
|
|||| ||||||||| ||||||| |||||||| |||| |||| | |||||||| |||| | ||||||| ||||||||||| |
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|
| T |
22359052 |
cttctcatttttatcttaaggttatttggcttgcttgtatttgggcaatttgaaaagagagaaacaactatgtcttcaaaa |
22358972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 11798253 - 11798510
Alignment:
| Q |
33 |
ggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatctcatatgt |
132 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||| || ||||| |
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|
| T |
11798253 |
ggtgtggaaattcagagacgacgtatcatcttttcattggttgcaacatttttgggagtgtttggtatttgatttgtaattggcttgacatttcttatgt |
11798352 |
T |
|
| Q |
133 |
tccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggctcgctttt |
232 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| || | |
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|
| T |
11798353 |
tccttcaggattggtaactgatcactttttacagtttactaacttggcgggtatgccgagatcttcccatatttattttaaggtgatttggctcgattct |
11798452 |
T |
|
| Q |
233 |
attcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11798453 |
atttgggcaatttggaaaaaacggaacaaccgtgtcttcaaaaatgcggtaatagatc |
11798510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 10349083 - 10349341
Alignment:
| Q |
33 |
ggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatctcat-atg |
131 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||| || || ||||||| | |||| ||||||| ||||||||||||||||||| | | ||| |
|
|
| T |
10349083 |
ggtgtggaaacattgagacggcggatcatcttttccttggttgtaatctttttggaaatgtttggtatttaatttgtaattggcttggcatttttttatg |
10349182 |
T |
|
| Q |
132 |
ttccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggctcgcttt |
231 |
Q |
| |
|
|||| |||| || | | ||| ||||||||||||||| || || |||| ||| ||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
10349183 |
cccctttaggactgatttctgatcactttttacagtttagcaacatgacgggcttgccgagatcttctcatacttatttcaaggtgatttggctcgcttc |
10349282 |
T |
|
| Q |
232 |
tattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
|||| | ||||| ||||| | ||| || |||||| | || ||||||||||||||||||| |
|
|
| T |
10349283 |
tatttgggcaatctggaaggatcgaaataactgtatattaaaaaatgcggtaatagatc |
10349341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 290
Target Start/End: Original strand, 3202312 - 3202521
Alignment:
| Q |
81 |
tttttgggagtgttaggtatttggtttgtaattggcttggcatctcatatgttccttcaggattggtaaccgattactttttacagtttactaatttggc |
180 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
3202312 |
tttttgggagtgtttgatatttaatttgtaattggcttggcatttcatatgttcctttaggaatggtaactgatcactttttacactttactaatttggt |
3202411 |
T |
|
| Q |
181 |
gggtatgctgagatcttcccatttttattttaaggtgatttggctcgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcg |
280 |
Q |
| |
|
|||||||| |||||||| |||| |||||||||| |||||||| ||||||| || | | |||||||| |||| |||| ||||| |||||||||||||||| |
|
|
| T |
3202412 |
gggtatgccgagatctttccatatttattttaaagtgatttgactcgcttctacttgggcaatttgcaaagaacggagcaactttgtcttcaaaaatgcg |
3202511 |
T |
|
| Q |
281 |
gtaatagatc |
290 |
Q |
| |
|
|||||||||| |
|
|
| T |
3202512 |
gtaatagatc |
3202521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 22859165 - 22858901
Alignment:
| Q |
26 |
gtcggtaggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatct |
125 |
Q |
| |
|
|||||| ||| |||||| | |||||| || ||||||||||| || | |||||| |||||||||||||| |||| || ||||||||||| ||||||| | |
|
|
| T |
22859165 |
gtcggtgggtatggaaacattgagacgacgaatcatcttttccttagttgcaacctttttgggagtgtttggtacttaatttgtaattggtttggcattt |
22859066 |
T |
|
| Q |
126 |
catatgttccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggct |
225 |
Q |
| |
|
| |||||||||||||||||| | | || ||||||||||||||| ||||||||||||||||| || |||||| ||| |||||| ||||||||||| || |
|
|
| T |
22859065 |
cttatgttccttcaggattgcttaatgaccactttttacagtttagtaatttggcgggtatgccgaaatcttctcatacttatttcaaggtgatttgact |
22858966 |
T |
|
| Q |
226 |
cgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
||||| |||| | |||||||| || | ||| || || ||| ||||||||||||| ||||||||| |
|
|
| T |
22858965 |
cgcttctatttgggcaatttgaaagggtcgtaataaatgtatcttcaaaaatgcactaatagatc |
22858901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 33 - 282
Target Start/End: Complemental strand, 13160230 - 13159981
Alignment:
| Q |
33 |
ggtgtggaaatttagagacggcggatcatcttttcattggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatctcatatgt |
132 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||| |||||| ||||||| |||||| |||| || |||||| ||||||||| || || ||||| |
|
|
| T |
13160230 |
ggtgtggaaacatggagacggcggatcatcttttccttggttgcaacctttttggaagtgtttggtacttaatttgtagttggcttggtatttcttatgt |
13160131 |
T |
|
| Q |
133 |
tccttcaggattggtaaccgattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggctcgctttt |
232 |
Q |
| |
|
||||||| || || | || || ||||||||||||||| |||||||||||| |||| ||||||||| ||| |||||||||||||||||||||||||| | |
|
|
| T |
13160130 |
tccttcaagactgcttactgaccactttttacagtttagtaatttggcgggcatgccgagatcttctcatacttattttaaggtgatttggctcgcttct |
13160031 |
T |
|
| Q |
233 |
attcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggt |
282 |
Q |
| |
|
|| | ||||||||||| | || || |||| | | |||||||||||||| |
|
|
| T |
13160030 |
atatgggcaatttggaaggaccgtaataactatatattcaaaaatgcggt |
13159981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 28708835 - 28708895
Alignment:
| Q |
164 |
cagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggc |
224 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||| | |||||||||||||| || ||||||| |
|
|
| T |
28708835 |
cagtttactcatttggcgggtttgccaagatctactcatttttattttaatgttatttggc |
28708895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 290
Target Start/End: Complemental strand, 7639397 - 7639158
Alignment:
| Q |
53 |
gcggatcatcttttca-ttggctgcaacatttttgggagtgttaggtatttggtttgtaattggcttggcatctcatatgttccttcaggattggtaacc |
151 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||||| |||||| |||| || ||||||||||||||||||| | |||||||||||| | | | | |
|
|
| T |
7639397 |
gcggatcatcttttttcttggttgtaacctttttggaagtgtttggtacttaatttgtaattggcttggcatttgttatgttccttcacgtcagctttct |
7639298 |
T |
|
| Q |
152 |
gattactttttacagtttactaatttggcgggtatgctgagatcttcccatttttatttt-aaggtgatttggctcgcttttattcgtgcaatttggaaa |
250 |
Q |
| |
|
||| ||||| | ||||||| || |||||||||||| ||||| ||| ||| ||| |||| ||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
7639297 |
gatcactttctgcagtttagcaacatggcgggtatgccgagattttctcatattttttttcaaggtgatttggctcgcttctatatgggcaatttggaag |
7639198 |
T |
|
| Q |
251 |
gctcggaacaactgtgtcttcaaaaatgcggtaatagatc |
290 |
Q |
| |
|
| ||| || |||| | | ||||||||| |||||||||||| |
|
|
| T |
7639197 |
gatcgaaataactatatattcaaaaatacggtaatagatc |
7639158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 25280797 - 25280737
Alignment:
| Q |
164 |
cagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggc |
224 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||| | |||||||||||||| || ||||||| |
|
|
| T |
25280797 |
cagtttactcatttggcgggtttgccaagatctactcatttttattttaatgttatttggc |
25280737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 5195283 - 5195353
Alignment:
| Q |
212 |
aaggtgatttggctcgcttttattcgtgcaatttggaaagctcggaacaactgtgtcttcaaaaatgcggt |
282 |
Q |
| |
|
||||| |||||||| |||| |||| | ||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
5195283 |
aaggttatttggcttgcttgtatttgggcaatttggaaggagaggaacaactgtatcttcaaaaatgcggt |
5195353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 5675892 - 5675831
Alignment:
| Q |
164 |
cagtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggct |
225 |
Q |
| |
|
||||||||| ||||||||||||||| || |||| ||||||||| ||||||| |||||||| |
|
|
| T |
5675892 |
cagtttactcatttggcgggtatgccacgagcttctcatttttatcttaaggttatttggct |
5675831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 36437 - 36377
Alignment:
| Q |
165 |
agtttactaatttggcgggtatgctgagatcttcccatttttattttaaggtgatttggct |
225 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
36437 |
agtttattaatttggcgggtataccacgatcttcacatttatattttaaggttatttggct |
36377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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