View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_44 (Length: 281)
Name: NF16003_high_44
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 34762315 - 34762543
Alignment:
| Q |
36 |
aggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatccatgctaac |
135 |
Q |
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| T |
34762315 |
aggaaaggagtttagcagcaacaccagctcttgcaagtggaacacacatgagattatgtgctcttggaaccgtaagaccaggtctctcatccatgctaac |
34762414 |
T |
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| Q |
136 |
cttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcctgctgtt |
235 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
34762415 |
cttaacatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcctgctgtt |
34762514 |
T |
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| Q |
236 |
gccaaattgactccaggacacatccttct |
264 |
Q |
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| T |
34762515 |
gccaaattgactccaggacacatccttct |
34762543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 34781908 - 34781645
Alignment:
| Q |
1 |
tatgttggtgattcatcctctcaagatattttaggaggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgccctt |
100 |
Q |
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| T |
34781908 |
tatgttggtgattcatcctctcaagatattttaggaggaaagaagtttatctgcgacaccagctcttgcaagaggaacacacatgagattatgtgccctt |
34781809 |
T |
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| Q |
101 |
ggaactgtgagaccaggtctctcatccatgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaa |
200 |
Q |
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| T |
34781808 |
ggaactgtgagaccaggtctctcttccatgctaaccttagcataatcaccattcaatatttctccatgttgaccaggtacttggagatcgaagcattgga |
34781709 |
T |
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| Q |
201 |
taatagatgcaagcagtgttgccattcctgctgttgccaaattgactccaggacacatccttct |
264 |
Q |
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| T |
34781708 |
taatagatgcaatcattgtggccattcctgcagtagccaaattgactccaggacacatccttct |
34781645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 34754329 - 34754558
Alignment:
| Q |
29 |
ttttaggaggaaagaagtttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatcca |
128 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || || |||| |
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| T |
34754329 |
ttttaggaggaaagaagtttatctgcgacaccagctcttgtgagtggaacacacatgagattatgtgtccttggaactgtgagaccaggcctttcttcca |
34754428 |
T |
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| Q |
129 |
tgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcc |
228 |
Q |
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| T |
34754429 |
tgctaacctttgcatcatcacctttcaatatttgtccttgtgggcctggtacctgcagatcaaagcactggataatagatgcaagcagtgtggccattcc |
34754528 |
T |
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| Q |
229 |
tgctgttgccaaattgactccaggacacat |
258 |
Q |
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||| || ||||||||||||||||||||||| |
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| T |
34754529 |
tgcagtagccaaattgactccaggacacat |
34754558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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