View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16003_high_49 (Length: 265)
Name: NF16003_high_49
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2010027 - 2010272
Alignment:
| Q |
19 |
gctaccaaatattcaactagactgagttcggctgctctggaatccgctcacacgtcattcagttgtttactgttttcgcctaacaactaagaatattttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2010027 |
gctaccaaatattcaactagactgagttcggctgctctggaatccgctcacacttcattcagttgtttactgttttcgcctaacaactaagaatattttt |
2010126 |
T |
|
| Q |
119 |
ggtgtaagcaattctcccctgcgacattttagagattcgtgtgcaactagctagagctaatgtggcaagcgacacttaaatgtcagcgccgctgcgtaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2010127 |
ggtgtaagcaattctcccctgcgacattttagagattcgtgtgcaactagctagagctaatgtggcaagcgacacttaaatgtcagcgccgctgcgtaat |
2010226 |
T |
|
| Q |
219 |
cattgggagtaaaaaactatttgttagattgttcatctcactcgac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
2010227 |
cattgggagtaaaaaactatttgttagattgtttgtctctctcgac |
2010272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 1966850 - 1966624
Alignment:
| Q |
19 |
gctaccaaatattcaactagactgagttcggctgctctggaatccgctcacacgtcattcagttgtttactgttttcgcctaacaactaagaatattttt |
118 |
Q |
| |
|
|||| |||| |||||| ||||| |||| ||||||||||||||| |||||||| | | ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
1966850 |
gctaacaaagattcaattagaccaagtttggctgctctggaatcggctcacactttactcagttggagactgttttcgcctaacaacttagaatattttt |
1966751 |
T |
|
| Q |
119 |
ggtgtaagcaattctcccctgcgacattttagagattcgtgtgcaactagctagagctaatgtggcaagcgacacttaaatgtcagcgccgctgcgtaat |
218 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| ||||| |||||| || |||| ||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
1966750 |
ggtgcaagcaattctcccctgcgccattttagagattc--atgcaa----ctagagatagtgtgacaagcgacaattaaatgtcagtgccgctgcgcaat |
1966657 |
T |
|
| Q |
219 |
cattgggagtaaaaaactatttgttagattgtt |
251 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| |
|
|
| T |
1966656 |
cattgggagtaaaaaattagttgttagattgtt |
1966624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University