View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_high_52 (Length: 255)

Name: NF16003_high_52
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_high_52
NF16003_high_52
[»] chr2 (1 HSPs)
chr2 (8-240)||(20039621-20039852)
[»] chr1 (1 HSPs)
chr1 (62-218)||(41134130-41134284)
[»] chr5 (2 HSPs)
chr5 (84-162)||(39087021-39087099)
chr5 (192-240)||(39087088-39087136)
[»] chr3 (1 HSPs)
chr3 (160-226)||(40820035-40820100)
[»] scaffold0136 (1 HSPs)
scaffold0136 (171-235)||(21771-21834)
[»] chr8 (1 HSPs)
chr8 (166-218)||(35885780-35885832)
[»] chr4 (1 HSPs)
chr4 (166-218)||(24472275-24472327)
[»] chr6 (1 HSPs)
chr6 (160-235)||(3336970-3337044)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 20039621 - 20039852
Alignment:
Q  8 tagcaaaggataactcatgggtttacccaaatttaataatttagcatcctccataaatcataataaaaatcaaaggaaaaatcaacattcaattccaaca 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20039621 tagcaaagaataactcatgggtttacccaaatttaataatttagcatcctccataaatcataataaaaatcaaaggaaaaatcaacattcaattccaaca 20039720  T
Q  108 acccatgaataaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgtttctcgtagtttcactttcaaagatacatataacctcttgtttgaaa 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20039721 actcatgaataaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgtttctcgtagtttcactttcaaagatacatat-acctcttgtttgaaa 20039819  T
Q  208 tttattaaaaagaaatgatgaaactgaacatat 240  Q
    ||||||||||| ||||||| |||| ||||||||    
T  20039820 tttattaaaaataaatgattaaacagaacatat 20039852  T

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Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 41134130 - 41134284
Alignment:
Q  62 aaatcataataaaaatcaaaggaaaaatcaacattcaattccaacaacccatgaat-aaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgt 160  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||  |||||||||| ||||||    
T  41134130 aaatcatgataaaaatcaaaggaaaaatcaacattcaattccagcaacccatgaatcaaagcaaaatcagtgcaaaaactt--ttgttgaaac-tcttgt 41134226  T
Q  161 ttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaa 218  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||    
T  41134227 ttcttgtagtttcactttcaaagacacagataacctcttgtttgaaattcattaaaaa 41134284  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 39087021 - 39087099
Alignment:
Q  84 aaaaatcaacattcaattccaacaacccatgaat-aaagcgaaatcagtgcaaaaacttgcttgttgaaacctcttgttt 162  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||||||||||||||||    
T  39087021 aaaaatcaacattcaattcca-caacccatgaatcaaaacgaaatcactgcaaatacttgcttgttgaaacctcttgttt 39087099  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 39087088 - 39087136
Alignment:
Q  192 aacctcttgtttgaaatttattaaaaagaaatgatgaaactgaacatat 240  Q
    |||||||||||||||||||||||||||  |||||| ||||  |||||||    
T  39087088 aacctcttgtttgaaatttattaaaaatgaatgattaaaccaaacatat 39087136  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 40820035 - 40820100
Alignment:
Q  160 tttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgat 226  Q
    |||||||||| |||||||||||||||||| || |||| |||||||||||| ||||||||| ||||||    
T  40820035 tttctcgtagcttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgat 40820100  T

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Target: scaffold0136 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 21771 - 21834
Alignment:
Q  171 ttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgatgaaactgaa 235  Q
    |||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| ||||||||    
T  21771 ttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgattaaactgaa 21834  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 35885780 - 35885832
Alignment:
Q  166 gtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaa 218  Q
    ||||||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  35885780 gtagtttcacttttaaagatgcacataacctcttgtttgaaattaattaaaaa 35885832  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 24472275 - 24472327
Alignment:
Q  166 gtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaa 218  Q
    ||||||||||||| |||||| || |||||||||||||||||||| ||||||||    
T  24472275 gtagtttcacttttaaagatgcacataacctcttgtttgaaattaattaaaaa 24472327  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 3337044 - 3336970
Alignment:
Q  160 tttctcgtagtttcactttcaaagatacatataacctcttgtttgaaatttattaaaaagaaatgatgaaactgaa 235  Q
    ||||| |||| |||||||||||||||||| || |||| |||||||||||| ||||||||| |||||| ||| ||||    
T  3337044 tttcttgtagcttcactttcaaagataca-attaccttttgtttgaaattaattaaaaagcaatgattaaattgaa 3336970  T

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