View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_54 (Length: 241)
Name: NF16003_high_54
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_54 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2563564 - 2563782
Alignment:
| Q |
17 |
cagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgag |
116 |
Q |
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| T |
2563564 |
cagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgtcgaagctattaagacattcaaaatctgtgag |
2563663 |
T |
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| Q |
117 |
caattcaagtattattatatagtttattaataattgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgat |
216 |
Q |
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| T |
2563664 |
caattcaag---tattatatagtttat---taattgatcaattagttaaacaaacatctaataacagtcagtaataacatatgttttgtagttgtttgat |
2563757 |
T |
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| Q |
217 |
tttgctgacaagtatagaggcacct |
241 |
Q |
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| T |
2563758 |
tttgctgacaagtatagaggcacct |
2563782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 2573337 - 2573445
Alignment:
| Q |
17 |
cagctgaggctgctgctgcactttcagctgcttcaattgtctttaagaaaaaagataccaaatattcgttgaagctattaagacattcaaaatctgtgag |
116 |
Q |
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|||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||| ||| ||||| | ||||||||||| || ||||||||||| || |
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| T |
2573337 |
cagctgaggctgctgccgctctttctgctgcttcaattgtctttaagaaaacagatatcaattattcatccaagctattaagccagtcaaaatctgtaag |
2573436 |
T |
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| Q |
117 |
caattcaag |
125 |
Q |
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| T |
2573437 |
caattcaag |
2573445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 2573586 - 2573628
Alignment:
| Q |
196 |
tatgttttgtagttgtttgattttgctgacaagtatagaggca |
238 |
Q |
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| T |
2573586 |
tatgtttcgcagttgtttgattttgctgataagtatagaggca |
2573628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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