View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_high_61 (Length: 222)

Name: NF16003_high_61
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_high_61
NF16003_high_61
[»] chr7 (2 HSPs)
chr7 (15-203)||(40451786-40451975)
chr7 (105-149)||(41242163-41242206)
[»] chr2 (1 HSPs)
chr2 (105-149)||(2220097-2220140)
[»] chr4 (7 HSPs)
chr4 (105-149)||(13159699-13159742)
chr4 (105-149)||(16736169-16736213)
chr4 (105-149)||(46191195-46191238)
chr4 (72-148)||(20177379-20177456)
chr4 (116-149)||(135821-135854)
chr4 (73-149)||(36825778-36825855)
chr4 (105-149)||(44546662-44546705)
[»] chr6 (1 HSPs)
chr6 (105-149)||(16477626-16477670)
[»] chr5 (3 HSPs)
chr5 (105-149)||(21825240-21825284)
chr5 (105-149)||(23257199-23257242)
chr5 (105-149)||(37268367-37268410)
[»] chr3 (1 HSPs)
chr3 (105-149)||(7638885-7638928)
[»] chr1 (1 HSPs)
chr1 (105-149)||(20819603-20819646)


Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 40451975 - 40451786
Alignment:
Q  15 taattctgtctttttgttttgagttggtggtggcaaccttctattatgaacagaatgtgtgatttatcactttaacatatcttatgcg-gatgaatcact 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| || |  ||||  | | |||||||||    
T  40451975 taattttgtctttttgttttgagttggtggtggcaaccttctggtatgaacagattgtgtgatttatcactttagcacactttatttgaggtgaatcact 40451876  T
Q  114 tattcgtttgagcaatataatccattttgatttgttnnnnnnnnnnnnnccaacacttttattgctttcatgagcgaaataactacactg 203  Q
    ||||||||||| ||||||||||||||||||||||||             |||||||||||||||||||||| ||||||||||||||||||    
T  40451875 tattcgtttgaacaatataatccattttgatttgttaaaaaaataaaatccaacacttttattgctttcataagcgaaataactacactg 40451786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 41242206 - 41242163
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||    
T  41242206 tgaatcactt-ttcgtttgagtaatatattccattttgatttgtt 41242163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 2220140 - 2220097
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  2220140 tgaatcactt-ttcgtttgagcaatataatccattttgatttgtt 2220097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 13159742 - 13159699
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  13159742 tgaatcactt-ttcgtttgagcaatatattccattttgatttgtt 13159699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 16736213 - 16736169
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    ||||||| || ||||||||||||||||||| ||||||||||||||    
T  16736213 tgaatcattttttcgtttgagcaatataattcattttgatttgtt 16736169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 46191238 - 46191195
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  46191238 tgaatcactt-ttcgtttgagcaatatattccattttgatttgtt 46191195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 20177456 - 20177379
Alignment:
Q  72 tgtgatttatcacttt-aacatatcttatgcg-gatgaatcacttattcgtttgagcaatataatccattttgatttgt 148  Q
    ||||||| |||||||| |||||||||| |||| | |||||||||| |||| |||||||||||| || ||||||||||||    
T  20177456 tgtgattcatcacttttaacatatcttgtgcgaggtgaatcactt-ttcgattgagcaatatattcgattttgatttgt 20177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 135854 - 135821
Alignment:
Q  116 ttcgtttgagcaatataatccattttgatttgtt 149  Q
    ||||||||||||||||| ||||||||||||||||    
T  135854 ttcgtttgagcaatatattccattttgatttgtt 135821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 36825855 - 36825778
Alignment:
Q  73 gtgatttatcactttaacatatcttatgcgga-tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||| |||||||||||| | ||||| |||  |||||||| | |||||  |||||||||| ||||||||||||||||    
T  36825855 gtgattcatcactttaacacaccttatacggggtgaatcaccttttcgtgcgagcaatatattccattttgatttgtt 36825778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 44546662 - 44546705
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||    
T  44546662 tgaatcactt-ttcctttgagcaatatattccattttgatttgtt 44546705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 16477670 - 16477626
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||| | ||| ||||||||||||| ||||||||||||||||    
T  16477670 tgaatcaccttttcttttgagcaatatattccattttgatttgtt 16477626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 21825240 - 21825284
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||| | ||| ||||||||||||| ||||||||||||||||    
T  21825240 tgaatcaccttttcttttgagcaatatattccattttgatttgtt 21825284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 23257199 - 23257242
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23257199 tgaatcactt-ttcgtttgaacaatatattccattttgatttgtt 23257242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 37268367 - 37268410
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||    
T  37268367 tgaatcactt-ttcctttgagcaatatattccattttgatttgtt 37268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 7638928 - 7638885
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||    
T  7638928 tgaatcactt-ttcgtttgagtaatatattccattttgatttgtt 7638885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 20819646 - 20819603
Alignment:
Q  105 tgaatcacttattcgtttgagcaatataatccattttgatttgtt 149  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||    
T  20819646 tgaatcactt-ttcttttgagcaatatattccattttgatttgtt 20819603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University