View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_62 (Length: 219)
Name: NF16003_high_62
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 3099163 - 3099345
Alignment:
| Q |
14 |
aatatagttgatgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaaaatggctacat |
113 |
Q |
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| T |
3099163 |
aatatagttgatgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaagatggctacat |
3099262 |
T |
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| Q |
114 |
tacttttaactgtgaaaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgatt |
196 |
Q |
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| T |
3099263 |
tacttttaactgtgaaaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgatt |
3099345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 3093305 - 3093488
Alignment:
| Q |
13 |
gaatatagttgatgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaaaatggctaca |
112 |
Q |
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| T |
3093305 |
gaatatagttgatgagcaaaccgattttcgaagatggagaatgcagtttccattagcatcaaataagaaccgattctgacagggttttatgatggctaca |
3093404 |
T |
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| Q |
113 |
ttacttttaactgtgaaaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgatt |
196 |
Q |
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| T |
3093405 |
gtacttttaactgtgaacacaaccttgttgttgacatctttgacgatgaagttatctccaaataaagctctcttccttgtgatt |
3093488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 3083226 - 3083311
Alignment:
| Q |
16 |
tatagttgatgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgtta |
101 |
Q |
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| T |
3083226 |
tatagttgatgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaaccggtgttggcggggtgtta |
3083311 |
T |
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