View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_high_63 (Length: 205)
Name: NF16003_high_63
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_high_63 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 21132194 - 21132014
Alignment:
| Q |
13 |
gattatactccaatctagatattgtgtctatcaataataaatatactatcattctagctatctaatttt-atctcctctaatttcttcgtctcgttataa |
111 |
Q |
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| T |
21132194 |
gattatactccaatctagatattgtgtctatcaataataaatatactatcattctagctatctaatttttatctcctctaatttcttcgtctcgttataa |
21132095 |
T |
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| Q |
112 |
attctaacaggtaagctctcaaagcttttcctcttaaaaacaggtaacatcctcttgcttgatgcgggtcaacactacact |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
21132094 |
attctaacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctcttgcttgatgcgggtcaacactacact |
21132014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 18660251 - 18660176
Alignment:
| Q |
117 |
aacaggtaagctctcaaagcttttcctcttaaaaacaggtaacatcctcttgcttgatgcgggtcaacactacact |
192 |
Q |
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| T |
18660251 |
aacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgcttgatgcgggtcaacacaacact |
18660176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Complemental strand, 21113190 - 21113061
Alignment:
| Q |
59 |
tatcattctagctatctaattttatctcctctaattt-ct--tcgtctcgttataaattctaacaggtaagctctcaaagcttttcctcttaaaaacagg |
155 |
Q |
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||||||||||| ||||| |||||||||||||||||| || || |||| || | | ||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
21113190 |
tatcattctaggaatctagttttatctcctctaattttctaatcttctccttgtgatttccgacaggtaaaaactcaaagcttttcctcttaaacacagg |
21113091 |
T |
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| Q |
156 |
taacatcctcttgcttgatgcgggtcaaca |
185 |
Q |
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| T |
21113090 |
taacatcatcttgctcgatgcgggtcaaca |
21113061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 39130547 - 39130713
Alignment:
| Q |
17 |
atactccaatctagatattgtgtctatcaataataaatatactatcattctagctatctaattttatctcctctaatttcttcgtctcgttataaattct |
116 |
Q |
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||||| |||||| |||||||||||||| ||||||||| ||| ||| ||| ||| |||| ||||||||||||||| ||||| | | | ||| ||| |
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| T |
39130547 |
atactacaatcttgatattgtgtctattaataataaaaatattatgattttagatatccaattttatctcctctgatttcctaattgtctcctaatttca |
39130646 |
T |
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| Q |
117 |
aacaggtaagctctcaaagcttttcctcttaaaaacaggtaacatcctcttgcttgatgcgggtcaa |
183 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| |||||| |
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| T |
39130647 |
aacaggtaagctctcaaagctttccctcttaaacacaggtaatatccttttgcttgatgccggtcaa |
39130713 |
T |
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