View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_10 (Length: 497)
Name: NF16003_low_10
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 11975485 - 11975395
Alignment:
| Q |
1 |
tgatttggacaagatattaatgacatccaatggtgcaagtgcaatactcataaccacacgtagtaaacttgtggccaacaatatgactgtt |
91 |
Q |
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| T |
11975485 |
tgatttggacaagatattaatgacgtccaatggtgcaagtgcaattctcataaccacacgtagtaaacttgtggccaacaatattactgtt |
11975395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 389
Target Start/End: Complemental strand, 11975352 - 11975157
Alignment:
| Q |
191 |
gatactattttcaccacgtttaagccacatgtctttttggggcttaatgaagaggaatctctgtcattgttttcgaaaattcttcgacaaaatagttcaa |
290 |
Q |
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| T |
11975352 |
gatactgtttttaccacgtttaagccacatgttattctggggcttaatgaagaggaatctttgtcattgttttggaaagttcgtggacaaagtagttcaa |
11975253 |
T |
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| Q |
291 |
aattcgatgatgtgaaggaagaaatgacacagaaaattatgatggattggaatggagttcctttcttaataatattcacagcaatgtttctgaacaatc |
389 |
Q |
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| T |
11975252 |
taatc---gatatgaagaaggaaatgcaaaggaagatggtgatggattgtggtggagttcctttcttgataatattcaaagcaatatttgtaaacaatc |
11975157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 11975125 - 11975073
Alignment:
| Q |
409 |
taaggaggagtttctacaagaacttaaggttagatactacgacaaacttccaa |
461 |
Q |
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| T |
11975125 |
taaggaggaatttctaaaagagcttaaggttagatactacgacaaacttccaa |
11975073 |
T |
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