View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_13 (Length: 445)
Name: NF16003_low_13
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 422
Target Start/End: Original strand, 39402134 - 39402542
Alignment:
| Q |
15 |
caaaggaggtgaaaatataaaatcaatttggttgttttcagctttaattagggaaatgtcctcttacattacttctatttgttataaataacagtttgta |
114 |
Q |
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| T |
39402134 |
caaaggaggtgaaaatataaaatcaatttggtagttttcagctttaattagggaaatgtcatcttacattacttctatttgttataaataacagtttgtg |
39402233 |
T |
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| Q |
115 |
ctaactgaatctcaagactcattagggtaaggaatggttacaaaatatggttaca-ggttacaaatatggttatacaaataattttatata------tta |
207 |
Q |
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| T |
39402234 |
ctaactgaata--aagactcattagggtaaggaatggttacaaa-tatggttacacggttacaaatatggttacacaaatatttttatatactactatta |
39402330 |
T |
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| Q |
208 |
tctatggacgaagtcagcacaatgaaagtagaatttaaaccaaataaaaccttaattacttctcaatgtacttaatgacatgcatatgttaatttgattt |
307 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39402331 |
tctatggacgaagtcagcacaatgaaggcagaatttaaaccaaaaaaaaccttaattacttctcaatgtacttaatgacatgcatatgttaatttgattt |
39402430 |
T |
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| Q |
308 |
gaaactcactcttaaaactggctagtttaagacatgagaataatgtccaaacacatatacatcaagctagaagttttggtaatgtgagactgcttcaata |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39402431 |
gaaactcactcttaaaactggctagtttaagacatgagaataatgtccaaacacatatacatcaagctagaagttttggtaatgtgaga---cttcaata |
39402527 |
T |
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| Q |
408 |
cttatggtcttagtt |
422 |
Q |
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| T |
39402528 |
cttatggtcttagtt |
39402542 |
T |
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