View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_low_14 (Length: 445)

Name: NF16003_low_14
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_low_14
NF16003_low_14
[»] chr2 (2 HSPs)
chr2 (16-445)||(9645187-9645616)
chr2 (238-278)||(11530030-11530070)
[»] chr6 (1 HSPs)
chr6 (339-379)||(27616047-27616087)
[»] chr5 (1 HSPs)
chr5 (313-376)||(40213811-40213874)
[»] chr4 (3 HSPs)
chr4 (289-376)||(13485360-13485447)
chr4 (340-376)||(8474833-8474869)
chr4 (338-382)||(8703089-8703133)
[»] chr1 (1 HSPs)
chr1 (313-376)||(7210568-7210631)
[»] chr8 (2 HSPs)
chr8 (338-376)||(26481003-26481041)
chr8 (315-376)||(14928151-14928212)


Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 9645616 - 9645187
Alignment:
Q  16 aagaaccttttagagaagtttgagcttctgtttttcctcctatcatcggattttattgatgcaacttccttctctctagcagctatttctcttttcannn 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9645616 aagaaccttttagagaagtctgagcttctgtttttcctcctatcatcggattttattgatgcaacttccttctctctagcagctatttctcttttcattt 9645517  T
Q  116 nnnnccattctacttccatagcctttgtcaatgcatcaactttctttgtgagcatctgaaaagaatatctcttatctttagttctatgtaacaaaaggga 215  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9645516 ttttccattctacttccatagcctttgtcaatgcatcaactttctttgtgagcatctgaaaagaatatctcttatctttagttctatgtaacaaaaggga 9645417  T
Q  216 gatatgacaaaacaatgttacgatttcaacaaatcactattgctttgcgatacactatttagtnnnnnnngaagtcaaataacggttatagcagtgatat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9645416 gatatgacaaaacaatgttacgatttcaacaaatcactattgctttgcgatacactatttagtaaaaaaagaagtcaaataacggttatagcagtgatat 9645317  T
Q  316 agcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaacgctgatacgaggatagttgttaccagtacctttatttct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9645316 agcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgcgattgacaacgctgatacgaggatagttgttaccagtacctttatttct 9645217  T
Q  416 tcatctttggtgtgcagagtactgtctttt 445  Q
    ||||||||||||||||||||||||||||||    
T  9645216 tcatctttggtgtgcagagtactgtctttt 9645187  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 11530030 - 11530070
Alignment:
Q  238 atttcaacaaatcactattgctttgcgatacactatttagt 278  Q
    |||| ||||||||||||||| | ||||||||||||||||||    
T  11530030 atttgaacaaatcactattgttctgcgatacactatttagt 11530070  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 27616087 - 27616047
Alignment:
Q  339 gaacaaaccactattttctacgatctgtgattgacaacgct 379  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  27616087 gaacaaaccactattttctgcgatctgcgattgacaacgct 27616047  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 40213874 - 40213811
Alignment:
Q  313 tatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 376  Q
    ||||||| |||||||||| ||||| | ||||||||||||||||| || || || ||||||||||    
T  40213874 tatagcactgttgcgtagcaaaatttaaacaaaccactattttccacaatatgcgattgacaac 40213811  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 13485360 - 13485447
Alignment:
Q  289 gtcaaataacggttatagcagtgatatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 376  Q
    ||||||||| ||||||||||| | || |||| | | || ||| ||||| |||||||||| || |||||  ||||||||||||||||||    
T  13485360 gtcaaataatggttatagcagcgctaaagcactatagcataggaaaatttgaacaaaccgctgttttccgcgatctgtgattgacaac 13485447  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 376
Target Start/End: Original strand, 8474833 - 8474869
Alignment:
Q  340 aacaaaccactattttctacgatctgtgattgacaac 376  Q
    ||||||||||||||||| | |||||||||||||||||    
T  8474833 aacaaaccactattttccatgatctgtgattgacaac 8474869  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 8703133 - 8703089
Alignment:
Q  338 tgaacaaaccactattttctacgatctgtgattgacaacgctgat 382  Q
    ||||||||| |||||||||| |||| ||||||||||||| |||||    
T  8703133 tgaacaaacgactattttctgcgatatgtgattgacaacactgat 8703089  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Complemental strand, 7210631 - 7210568
Alignment:
Q  313 tatagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 376  Q
    ||||||||||||||||||  |||| ||| ||||||||||||||| || |||||  |||||||||    
T  7210631 tatagcattgttgcgtagtgaaatttgagcaaaccactattttccacaatctgcaattgacaac 7210568  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 26481041 - 26481003
Alignment:
Q  338 tgaacaaaccactattttctacgatctgtgattgacaac 376  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  26481041 tgaacaaaccgctattttctgcgatctgtgattgacaac 26481003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 14928212 - 14928151
Alignment:
Q  315 tagcattgttgcgtagaaaaatatgaacaaaccactattttctacgatctgtgattgacaac 376  Q
    ||||| |||||| ||| ||||| ||||||| |||||||||||| |||||||  |||||||||    
T  14928212 tagcactgttgcatagcaaaatttgaacaacccactattttctgcgatctgcaattgacaac 14928151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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