View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_15 (Length: 442)
Name: NF16003_low_15
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 428
Target Start/End: Original strand, 30781424 - 30781817
Alignment:
| Q |
20 |
aagagcaccagtgccttgcactaattgaaacggttattcagttatatgacaattagtcattagttagggtcttaactgtaatgacttctatctatagcaa |
119 |
Q |
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| T |
30781424 |
aagagcaccagtgccttgcactaattgaaacggttattcagttatatgacaattagtcattagttagggtcttaactgtaatgacttctatctacagcaa |
30781523 |
T |
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| Q |
120 |
tgatgtaagaacaacttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttcctctctacatctcatgcttcactaccttcgatga |
219 |
Q |
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| T |
30781524 |
tgatgtaagaac---ttcagagtaatgaaatctttgcttcatttttgtcttccagttaccctcttcctct--acatctcatgcttcactaccttcgatga |
30781618 |
T |
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| Q |
220 |
gataggttttggtccaatttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaattggatttttcatt |
319 |
Q |
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| T |
30781619 |
gataggttttggtccaacttattcctagcagtaaacctgaagacctattattaaaatgcaaattttaacgatgcatagtttgtgaattggatttttcatt |
30781718 |
T |
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| Q |
320 |
atagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnnnnnntaacaaatcaccagaagggatgaatatgttaagaatca |
419 |
Q |
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| T |
30781719 |
atagt--------aataagcat--ggaataatcataaattaggcgattagtgactaaaaaaataacaaatcaccagaagggatgaatatgttaagaatca |
30781808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 278 - 428
Target Start/End: Original strand, 30781879 - 30782019
Alignment:
| Q |
278 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaagcatggaataatcataagcaataatcataaattaggcgattagtgactnnn |
377 |
Q |
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| T |
30781879 |
caaattttaacgatgcatagtttgtgaattggatttttcattatagtaa--------taagcat--ggaataatcataaattaggcgattagtgactaaa |
30781968 |
T |
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| Q |
378 |
nnnntaacaaatcaccagaagggatgaatatgttaagaatcaaagaataat |
428 |
Q |
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| T |
30781969 |
aaaataacaaatcaccagaagggatgaatatgttaagaatcaaagaataat |
30782019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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