View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16003_low_17 (Length: 431)
Name: NF16003_low_17
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_17 |
 | |
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| [»] scaffold0238 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0238 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 13241 - 13651
Alignment:
| Q |
16 |
atttttgcagcctttttaatgtattatgcaaaccaatttgtattctgaacctttgaaattaaaggcttcctgtagaggttacaaatttcagtttannnnn |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13241 |
atttttgcagccttttcaatgtattatgcaaaccaatttgtattctgaagctttgaaattaaaggcttcctgtagaggttacaaatttcagtttattttt |
13340 |
T |
|
| Q |
116 |
nnnngcctccagtttgagattcccattattttctctgt-cactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13341 |
ttt-gcctccagtttgagattcccactattttctttgttcactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
13439 |
T |
|
| Q |
215 |
tnnnnnnntatgatcgcaaaaaacaactaatccaatcctctatccattttgttgttcaaattgaaaattgtagaacatgatgacagtgacattgctgcta |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
13440 |
taaaaaaatatgatcgcaaaaaacaactaatccaatcctctatccattttgttgttcaaattgaaaattgtagaacatgatgaaagtgacattgctgcta |
13539 |
T |
|
| Q |
315 |
tagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
13540 |
tagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgaatatacagatgtaaatgacactggtgtagtaatatag |
13639 |
T |
|
| Q |
415 |
tattagaattat |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13640 |
tattagaattat |
13651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 13646 - 13699
Alignment:
| Q |
372 |
aattgtatatacagatgtaaatgacactggtgtagt-aatatagtattagaatt |
424 |
Q |
| |
|
|||| |||||||| ||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
13646 |
aattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaatt |
13699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 10453405 - 10453815
Alignment:
| Q |
16 |
atttttgcagcctttttaatgtattatgcaaaccaatttgtattctgaacctttgaaattaaaggcttcctgtagaggttacaaatttcagtttannnnn |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10453405 |
atttttgcagccttttcaatgtattatgcaaaccaatttgtagtctgaacctttgaaattaaaggcttcctgtagaggttaaaaatttcagtttattttt |
10453504 |
T |
|
| Q |
116 |
nnnngcctccagtttgagattcccattattttctctgt-cactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10453505 |
ttt-gcctccagtttgagattcccactattttctttgttcactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
10453603 |
T |
|
| Q |
215 |
tnnnnnnntatgatcgcaaaaaacaactaatccaatcctctatccattttgttgttcaaattgaaaattgtagaacatgatgacagtgacattgctgcta |
314 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10453604 |
taaaaaaatatgatcgcaaaaaacaactaatccaatcctctatccattttgttgttcaaattgaaaattgtagaacatgatgaaagtgacattgctgcta |
10453703 |
T |
|
| Q |
315 |
tagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatag |
414 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10453704 |
tagaactcaaggtggagctaatctcaagtgcaacttaatgtgttttttctattgtgacattgtatatacagatgtaaatgacactggtgtagtaatatag |
10453803 |
T |
|
| Q |
415 |
tattagaattat |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10453804 |
tattagaattat |
10453815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 10453810 - 10453863
Alignment:
| Q |
372 |
aattgtatatacagatgtaaatgacactggtgtagt-aatatagtattagaatt |
424 |
Q |
| |
|
|||| |||||||| ||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
10453810 |
aattatatatacatatgtaaatggcagtggtgtagtaaatatagtattagaatt |
10453863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 426
Target Start/End: Complemental strand, 12603699 - 12603291
Alignment:
| Q |
16 |
atttttgcagcctttttaatgtattatgcaaaccaatttgtattctgaacctttgaaattaaaggcttcctgtagaggttacaaatttcagtttannnnn |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12603699 |
atttttgcagccttttcaatgtattatgcaaaccaatttgtattctgaacctttgaaattaaaggcttcctgtagaggttacaaatttcagtttattttt |
12603600 |
T |
|
| Q |
116 |
nnnngcctccagtttgagattcccattattttctctgt-cactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12603599 |
ttttgcctccagtttgaaattcccactattttctttgttcactttcaatctgtcaaaatcctttattttacttttgctaa---ccattttaattggtagt |
12603503 |
T |
|
| Q |
215 |
tnnnnnnntatgatcgcaaaaaacaactaatccaatcctctatccattttgttgttcaaattgaaaattgtagaacatgatgacagtgacattgctgcta |
314 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12603502 |
taaaaaaatatgatcgcaaaaaacaactaatccaatcctctatccattttgtcgttcaaattgaaaattgtagaacatgatgaaagtgacattgctgcta |
12603403 |
T |
|
| Q |
315 |
tagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatag |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12603402 |
tagaactcaaagtggagctaatctcaagtgcaacttaatgtgttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatat |
12603303 |
T |
|
| Q |
415 |
tattagaattat |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12603302 |
tattagaattat |
12603291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 23261963 - 23262138
Alignment:
| Q |
42 |
tgcaaaccaatttgtattctgaaccttt-gaaatta-aaggcttcctgtagaggttacaaatttcagtttannnnnnnnngcctccagtttgagattccc |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
23261963 |
tgcaaaccaatttgtagtctgaaccttttgaaatttgaaggcttcctgtagaggttacatatttcagttttattgtttttgcctccagtttgagattccc |
23262062 |
T |
|
| Q |
140 |
attattttctctgt-cactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
| |||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
23262063 |
actattttctttgttcactttcaatctaaaaaaatcctttattttaattttgctaaactccattttaattgttagt |
23262138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 12603296 - 12603243
Alignment:
| Q |
372 |
aattgtatatacagatgtaaatgacactggtgtagt-aatatagtattagaatt |
424 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
12603296 |
aattatatatacagatgtaaatggcagtggtgtagtaaatatagtattagaatt |
12603243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 285 - 426
Target Start/End: Original strand, 4739972 - 4740114
Alignment:
| Q |
285 |
tagaacatgatgacagtgacattgctgctatagaactcaaagtggagctaatctcaagtgcaacttaatgtgtttt-ttctattgtgaaattgtatatac |
383 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4739972 |
tagaacaagatgaaagtgacattgctgctatagaactcaaggtggagtaaatctcaagtgcaacttaatgtgtttttttctattgtgacattgtatatac |
4740071 |
T |
|
| Q |
384 |
agatgtaaatgacactggtgtagtaatatagtattagaattat |
426 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4740072 |
agatgtaaatgacagtggtgtagtaatatagtattagaattat |
4740114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 445065 - 444927
Alignment:
| Q |
77 |
aaggcttcctgtagaggttacaaatttcagtttannnnnnnnngcctccagtttgagattcccattattttctctgt-cactttcaatctgtaaaaatcc |
175 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||| |
|
|
| T |
445065 |
aaggcttcctgtagaggttacatatttcagtttaatcgtttttgcctccagtttgagattcccactattttctttgttcactttcaatctaaaaaaatcc |
444966 |
T |
|
| Q |
176 |
tttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
444965 |
tttattttaattttgctaaactccattttaattgttagt |
444927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 412
Target Start/End: Complemental strand, 31900797 - 31900701
Alignment:
| Q |
318 |
aactcaaagtggagctaatctcaagtgcaacttaatgt--gttttttctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatat |
412 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||| ||||| | |||||||| |||||| |||| || |||||||| ||| |||||||||| |
|
|
| T |
31900797 |
aactcaaggtggagttaatctcaagtgcagcttaatgtgagttttatgtattgtgacattgtacataccaatttaaatgactttggggtagtaatat |
31900701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 56477984 - 56477809
Alignment:
| Q |
42 |
tgcaaaccaatttgtattctgaaccttt-gaaatta-aaggcttcctgtagaggttacaaatttcagtttannnnnnnnngcctccagtttgagattccc |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
56477984 |
tgcaaaccaatttgtagtctgaaccttttgaaatttgaaggcttcctgtagaggttacatatttcagttttattgtttttgcctccagtttgagattccc |
56477885 |
T |
|
| Q |
140 |
attattttctctgt-cactttcaatctgtaaaaatcctttattttacttttgctaaactccattttaattggtagt |
214 |
Q |
| |
|
| |||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
56477884 |
actattttctttgttcactttcaatctaaaaaaatcctttattttaattttgctaaactccattttaattgttagt |
56477809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 888614 - 888514
Alignment:
| Q |
326 |
gtggagctaatctcaagtgcaacttaatgtgtttttt--ctattgtgaaattgtatatacagatgtaaatgacactggtgtagtaatatagtattagaat |
423 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||| |||| |||||| |||| |||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
888614 |
gtggagctaatctcaagtgcagcttaatgtgtgttttatctatcgtgacattgtacataccaatgtaaatgacattggtgtagtaatattgtattaaaat |
888515 |
T |
|
| Q |
424 |
t |
424 |
Q |
| |
|
| |
|
|
| T |
888514 |
t |
888514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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