View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_20 (Length: 407)
Name: NF16003_low_20
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 45745240 - 45745620
Alignment:
| Q |
1 |
ggattagcacttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctacagcttatgaatggttgtgcattagaaggat |
100 |
Q |
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| T |
45745240 |
ggattagcacttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctgcagcttatgaatggttgtgcattagaaggat |
45745339 |
T |
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| Q |
101 |
catgaccaatctcaacagaaacatcaaccactgcccatacaccttctgcatgctgcttacagaaccgaaggattctcacttgacgaaccgggactagtgg |
200 |
Q |
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| T |
45745340 |
catgaccaatctcaacagaaacatcaaccactgcccatacaccttctgcatgctgcttacagaaccgaaggattctcacttgacgaaccgggactagtgg |
45745439 |
T |
|
| Q |
201 |
tgagagcaattgaacctcggtatgcatctgaaattgcataatcctagtaagctccagcaaaccaaagcacattgaagcaaacttatatacagcaacagnn |
300 |
Q |
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| T |
45745440 |
tgagagcaattgaacctcggtatgcatctgaaattgcataatcctagtaagctccagcaaaccaaggcacattgaagcaaacttatatacagcaacag-- |
45745537 |
T |
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| Q |
301 |
nnnnnnnnncataccaaatgtatagcaccatttctggttccaccgattccaccagataaaacatcaaggttggcagatctagc |
383 |
Q |
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| T |
45745538 |
aaaaaaaaacgtaccaaatgtatagcaccatttctggttccaccgattccaccagataaaacatcaaggttggcagatctagc |
45745620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 12325507 - 12325558
Alignment:
| Q |
11 |
ttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaag |
62 |
Q |
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| T |
12325507 |
ttaccttggagtaaccatttggcatatcttgcacaacacaaccagagggaag |
12325558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 12325620 - 12325668
Alignment:
| Q |
124 |
tcaaccactgcccatacaccttctgcatgctgcttacagaaccgaagga |
172 |
Q |
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| T |
12325620 |
tcaaccacagcccaaacaccttctgcatgctgcttgcaaaacctaagga |
12325668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 28597362 - 28597423
Alignment:
| Q |
11 |
ttaccttggagtaaccatttggcatatcctgcacaatacagccagaaggaagtcttctacag |
72 |
Q |
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| T |
28597362 |
ttaccttagagtaaccatttggcatatcttgaaccacacaaccagaaggaagcctcctacag |
28597423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 28597475 - 28597512
Alignment:
| Q |
121 |
acatcaaccactgcccatacaccttctgcatgctgctt |
158 |
Q |
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| T |
28597475 |
acatcaaccactgcccataccccttctgcatgttgctt |
28597512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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