View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16003_low_23 (Length: 374)
Name: NF16003_low_23
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_23 |
 | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0018 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 39246 - 38937
Alignment:
| Q |
14 |
caaaggtacatctattagaattcaaaatgatcatcctaaggaacttatcctacggaatctgaatgaagggattaccaccagatccaaagatgtaatttcc |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39246 |
caaaggtacatctattataattcaaaatgatcatcctaaggaccttatcctacggaatctgaatgaagggattaccaccagatccaaagatgtaatttcc |
39147 |
T |
|
| Q |
114 |
gactcttgttttgtttctaagttttaatctaagaatctgaaagaggcattaactcataagttctggataaatgtt------atgcaagaggaacttggtc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39146 |
aactcttgttttgtttctaagttttaatctaagaatgtgaaagaggtcttaactcataagttctggataaatgttatgcttatgcaagaggaacttggtc |
39047 |
T |
|
| Q |
208 |
aatacaagag-aaatgcaatttggaaattggttcctatagcggaacggttgaatgtcattgatgctaattggatttataagaacaagtatgatgaaagtg |
306 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39046 |
aatacaagagaaaatgcagtttggaaattggttcctatagcggaacagttgaatgtcattgatgctaattggatctataagaacaagtatgatgaaagtg |
38947 |
T |
|
| Q |
307 |
gcattgtaac |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
38946 |
gcattgtaac |
38937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 38059 - 37994
Alignment:
| Q |
309 |
attgtaactatgaacaaggttcgcttagtggctcaaggatgcagcaaaggtgaaattgacaagacc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38059 |
attgtaactatgaacaaggttcgcttagtggctcaaggatgcagcaaaggtgaaattgacaagacc |
37994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 17535806 - 17535870
Alignment:
| Q |
310 |
ttgtaactatgaacaaggttcgcttagtggctcaaggatgcagcaaaggtgaaattgacaagacc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
17535806 |
ttgtaactatgaacaaggttcgcttagtggctcagggatgcagcaaaggtggaattgacaagacc |
17535870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University