View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_26 (Length: 364)
Name: NF16003_low_26
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 2009899 - 2009553
Alignment:
| Q |
1 |
cgcatgagcacaactagaacagtctcagaacatgagaatgccaggatttaaaaaagacaggccacaaaccgaaacacaaccatgcgagtttagttgagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2009899 |
cgcatgagcacaactagaacagtctcagaacatgagaatgccaggatttaaaaaagacaggccacaaaccgaaacacaaccatgcgagtttagttgagcg |
2009800 |
T |
|
| Q |
101 |
gcgacagttggagcatatctttagtctactgaagtcacggctagtaggaattatgttcttaacatatgtctataaataccacttttaaatatcattttag |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2009799 |
gcgacagttggagcgtatctttagtctactgaagtcacggctagtaggaattatgttcttaacatatgtctataaataccacttttaaatatcattttag |
2009700 |
T |
|
| Q |
201 |
aaacacctcaatcagtaataacttaaatttacacgcaatttagctcatataatatattgtttgtatctgactggtgaaaactagctcattagatggtggt |
300 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
2009699 |
aaacacctcaatcagtaataacttcaatttactcgcaatttagctcatataatatattgtttctatctgactggtgaaaactagctcataagatggtggt |
2009600 |
T |
|
| Q |
301 |
gcccaaacacatatatacattcctcaaataaaactaaaataaattta |
347 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2009599 |
gcccaaacacataaatacattcctcaaataaaactaaaataaattta |
2009553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 347
Target Start/End: Original strand, 1966981 - 1967324
Alignment:
| Q |
4 |
atgagcacaactagaacagtctcagaacatgagaatgccaggatttaaaaaagacaggccacaaaccgaaacacaaccatgcgagtttagttgagaggcg |
103 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| | || |
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|
| T |
1966981 |
atgagcacaaccgaaacagtcggataacatgagaatgccaggatagaaaa-agacaggccacaaactcaaacacaaccatgcgagtttagttgagcgacg |
1967079 |
T |
|
| Q |
104 |
acagttggagcatatctttagtctactgaagtcacggctagtaggaattatgttcttaacatatgtctataaataccacttttaaatatcattttagaaa |
203 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1967080 |
acagttggagcgtatctttagtctactgaagtcacggctagtaggaattatgttcttaacatatgtctataaataccacttttaaatatcattttagaaa |
1967179 |
T |
|
| Q |
204 |
cacctcaat-cagtaataacttaaatttacacgcaatttagctcatataatatattgtttgtatctgactggtgaaaactagctcattagatggtggtgc |
302 |
Q |
| |
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||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1967180 |
cacctcactccagtaataacttcaatttactcgcaatttagctcatataatatattgtttgtatctgactggtgaaaactagctcataagatggtggtgc |
1967279 |
T |
|
| Q |
303 |
ccaaacacatatatacattcctcaaataaaactaaaataaattta |
347 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1967280 |
ccaaacacataaatacattcctcaaataaaactaaaataaattta |
1967324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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