View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_28 (Length: 360)
Name: NF16003_low_28
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 43470081 - 43469756
Alignment:
| Q |
17 |
ataatccagggtgtggtttaattagatgaggtgtgtgtttgtgatgaaaggttgttgtatagagaggttttgtttggtgtatatgatgtgagaagaagaa |
116 |
Q |
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| T |
43470081 |
ataatccagggtgtggtttaattagatgaggtgtgtgtttgtgatgaaaggttgttgtatagagaggttttgtttggtgtatatgatgtgagaagaagaa |
43469982 |
T |
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| Q |
117 |
ttcatcatgtgaatgcatgtgcattgagttggagaacatgctcaaagtaacaaacaacacacttaggtacacctgtctctctcccattccattggaagcc |
216 |
Q |
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| T |
43469981 |
ttcatcatgtgaatgcatgtgcattgagttggagaacatgctcaaagtaacaaacaacacacttaggtacacctgtctctctcccattccattggaagcc |
43469882 |
T |
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| Q |
217 |
tccttttaaagtgtgtattgtggtccccaccttctaatcttattgatttatccattaatacatattactactataggt-acaccttaattatataaatgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
43469881 |
tccttttaaagtgtgtattgtggtccccaccttctaatcttattgatttatccattaatacatattac-----taggtaacacc----ttatataaatgt |
43469791 |
T |
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| Q |
316 |
tctctcttggtctatcattttgcaatacccctttg |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43469790 |
tctctcttggtctatcattttgcaatacccctttg |
43469756 |
T |
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