View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_32 (Length: 349)
Name: NF16003_low_32
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 12776482 - 12776286
Alignment:
| Q |
2 |
atatgctaactaaaggggaacatgttgtattgtgaggatggacaattcgggtaatgtactttctttgagtaatttagaaggcatcaaaattgtaaagaga |
101 |
Q |
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| T |
12776482 |
atatgttaactaaaggtgaacatgttgtatcgtgaggatggacaattcgggtaaggtactttctttgagtaatttagaaggcatcaaaattgtaaagaga |
12776383 |
T |
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| Q |
102 |
atctatccgtgtgtaagtaatgtcatgttgtgtactattttgtttgtatagttgtgagaacacaacgtgtaggtatagctcagctactccatcaatt |
198 |
Q |
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| T |
12776382 |
atctatccgtgtgtaagtaatgtcatgttgtgtactattttgtttgtatagttgtgataacacaacgtgtaggtatagctcagctactacatcaatt |
12776286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 349
Target Start/End: Complemental strand, 12776217 - 12776135
Alignment:
| Q |
267 |
tagggtttgttagaccctgacgttatcacaaaataagaagcacctacaaaggagcacgttactgaaatgaaacttaagcacac |
349 |
Q |
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| T |
12776217 |
tagggtttgttagaccctgacgttatcacaaaataagaagcaccaacaaaggagcacgttactgtaatggaacttaaacacac |
12776135 |
T |
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