View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_34 (Length: 341)
Name: NF16003_low_34
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 74 - 336
Target Start/End: Complemental strand, 19042706 - 19042443
Alignment:
| Q |
74 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
173 |
Q |
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| T |
19042706 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
19042607 |
T |
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| Q |
174 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
273 |
Q |
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| T |
19042606 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
19042508 |
T |
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| Q |
274 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcatctcac |
336 |
Q |
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| T |
19042507 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcatttcac |
19042443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 74 - 336
Target Start/End: Original strand, 20711930 - 20712193
Alignment:
| Q |
74 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
173 |
Q |
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| T |
20711930 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
20712029 |
T |
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| Q |
174 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
273 |
Q |
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| T |
20712030 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
20712128 |
T |
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| Q |
274 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcatctcac |
336 |
Q |
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| T |
20712129 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcatttcac |
20712193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 19042818 - 19042751
Alignment:
| Q |
3 |
atgtattcaatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
70 |
Q |
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| T |
19042818 |
atgtattcaatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
19042751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20711818 - 20711885
Alignment:
| Q |
3 |
atgtattcaatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
70 |
Q |
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| T |
20711818 |
atgtattcaatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
20711885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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