View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_36 (Length: 339)
Name: NF16003_low_36
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_36 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 40199576 - 40199916
Alignment:
| Q |
1 |
tatgcgaatgttatcgtgatgatgatcctatcaatggcaagagaaactacacttacatggatgctgttcattccaatcttggtaaattcaaattcacaca |
100 |
Q |
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| T |
40199576 |
tatgcgaatgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgctgttcattccaatcttggtaaattcaaattcacaca |
40199675 |
T |
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| Q |
101 |
ccttgct-------aactatacatgcatacatacataagaagaaaaacaaattttaaattttgttcagaatgaaacatgaaatactc--gttcatgcagg |
191 |
Q |
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| T |
40199676 |
ccttgctaaatgctaactatacatgcatacatacataagaagaaaaacaaattttaaattttgttcagaatgtaacatgaaatactcgtgttcacgcagg |
40199775 |
T |
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| Q |
192 |
atagatgttagacacaatgtccaagacaacgtgtataatgtacaagcnnnnnnntcaacatataacaataaataaatataaagcagtaaaggaggacaca |
291 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40199776 |
atagatgttagatacaatgtccaagacaacgtgtataatgtacaagtaaaaaaatcaacatataacaataaataaatgtaaagcagtaaaggaggacaca |
40199875 |
T |
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| Q |
292 |
tataattggtaacctagttcggtgcaacgtaacctactctg |
332 |
Q |
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| T |
40199876 |
tataattggtaacctagttcggtgcaacgtaacctactctg |
40199916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 40203744 - 40203855
Alignment:
| Q |
6 |
gaatgttatcgtgatgatgatcctatcaatggcaagagaaactacacttacatggatgctgttcattccaatcttggtaaattcaaattcacacaccttg |
105 |
Q |
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| T |
40203744 |
gaatgttatcgtactggtgatcctatcagtggcaagagaaactatacttacatggatgttgttcattccaatcttggtaaattcaaattcacacacctag |
40203843 |
T |
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| Q |
106 |
ctaactatacat |
117 |
Q |
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| T |
40203844 |
ctaaccatacat |
40203855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 40207900 - 40207983
Alignment:
| Q |
6 |
gaatgttatcgtgatgatgatcctatcaatggcaagagaaactacacttacatggatgctgttcattccaatcttggtaaattc |
89 |
Q |
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| T |
40207900 |
gaatgttatcgtaatgatgatcctatcaatggcaagagaaactacacttacatggatgttgttcattccaatcttggtaaattc |
40207983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 18536 - 18599
Alignment:
| Q |
171 |
tgaaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataatgtac |
234 |
Q |
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| T |
18536 |
tgaaattctcgttcacgtaggacaaatgttagacacaatgtccaagacaaagtgtataacgtac |
18599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 3322433 - 3322495
Alignment:
| Q |
171 |
tgaaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataatgta |
233 |
Q |
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| T |
3322433 |
tgaaattcttgttcacgcaagatagatgttagacacaatgttcgggacaacgtgtataatgta |
3322495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23181249 - 23181305
Alignment:
| Q |
173 |
aaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataa |
229 |
Q |
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| T |
23181249 |
aaattctcgttcacgctggacatatgttagacacaatgtccaagacaaggtgtataa |
23181305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23592506 - 23592562
Alignment:
| Q |
173 |
aaatactcgttcatgcaggatagatgttagacacaatgtccaagacaacgtgtataa |
229 |
Q |
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|||| |||||||| || ||| | ||||||||||||||||||||||||| |||||||| |
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| T |
23592506 |
aaattctcgttcacgctggacatatgttagacacaatgtccaagacaaggtgtataa |
23592562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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