View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_38 (Length: 334)
Name: NF16003_low_38
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 10965503 - 10965197
Alignment:
| Q |
13 |
gatacatcacattttgaactagactcaaatctgccacaatccctaataatttagtgtagtaaccactacttattaatggtataaaaattatggggtggtg |
112 |
Q |
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| T |
10965503 |
gatacatcacattttgaactagactcaaatctgccacaatccctaataatttagtgtagtaaccactacttattaatggtatataaattatgggatggtg |
10965404 |
T |
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| Q |
113 |
ccgtggcacctatagtaatcacgtgatcgagtcaaatttataccttcaaacactatccaaaactccgtcacataagcactacacgtcaggggcggatctc |
212 |
Q |
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| T |
10965403 |
ccgtgacacctatagtaatcacgtgatcgagtcaaatttataccttcaaacattatctaaaactccgtcacataagcactacacgtcaggggtggatctc |
10965304 |
T |
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| Q |
213 |
tgaaaagacccataggtgccacagcaccatctcgcctaatttttattttgttctatagaaaattactaaaatactctttatacaagtttattttaaacat |
312 |
Q |
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| T |
10965303 |
ttaaaagacccataggtgtcacggcaccaccccgcctaatttttattttgttctatagaaaattattaaaatactctttatacaattttattttaaacat |
10965204 |
T |
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| Q |
313 |
gtaccgt |
319 |
Q |
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||||||| |
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| T |
10965203 |
gtaccgt |
10965197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 34649562 - 34649521
Alignment:
| Q |
266 |
tatagaaaattactaaaatactctttatacaagtttatttta |
307 |
Q |
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| T |
34649562 |
tatagaaaattactaaaatactcttgatacaattttatttta |
34649521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 28467579 - 28467629
Alignment:
| Q |
257 |
attttgttctatagaaaattactaaaatactctttatacaagtttatttta |
307 |
Q |
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||||| || ||||||||||||||||||||||||| ||| || ||||||||| |
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| T |
28467579 |
atttttttatatagaaaattactaaaatactcttgatataattttatttta |
28467629 |
T |
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