View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_39 (Length: 321)
Name: NF16003_low_39
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 51231856 - 51232131
Alignment:
| Q |
12 |
tgagatgaagtaatattctctgaattaaagagaaataattgcatcttttaggagcgacgaataacattggttaaaaggggnnnnnnnnnnnnnnnctaac |
111 |
Q |
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| T |
51231856 |
tgagatgaagtaatattctctgaatttaagagaaataattgcatcttttaggagcgacgaataacattggttaaaaggggaaaaaatccaaaaacctaac |
51231955 |
T |
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| Q |
112 |
aatcattgttggccctgaatctttagtcttaaaagcaatcacatgccttggttggctatataatatctccactacctatcctagttagctatggtatggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51231956 |
aatcattgttggccctgaatctttagtcttaaaagcaatcacatgccttggttggctatataatatctccactacctatcctagttagctatggtatggt |
51232055 |
T |
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| Q |
212 |
atggagacaatgtaacagactccatatatagatcggttttcagattttagatttactatactgaagtgaggagaaat |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
51232056 |
atggagacaatgtaacagactccatatatagatcggttattagattttaga-ttactatactgaagtgaggagaaat |
51232131 |
T |
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