View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_4 (Length: 580)
Name: NF16003_low_4
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 13 - 564
Target Start/End: Original strand, 43463317 - 43463868
Alignment:
| Q |
13 |
gagtgagatgaaaactagaaatggatagtatacacatcattaaaaatcatacgcgtaatgccatcttcttaagtttattcattgccgagaaatgttttag |
112 |
Q |
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| T |
43463317 |
gagttagatgaaaactagaaatggatagtatacacatcattaaaaatcatacgcgtaatgccatcttcttaagtttattcatcgccgagaaatgttttag |
43463416 |
T |
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| Q |
113 |
gcgtgtcaaaacagcagaatccaaaggctggtccggtgcaactgtatcatcaagaatccagggatgacctgataatacatatactccattgtcattggat |
212 |
Q |
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| T |
43463417 |
gcgtgtcaaaacagcagaatccaaaggctggtcaggtgcaactgtatcatcaagaatccagggatgacctgataatacatatactccattgtcattggat |
43463516 |
T |
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| Q |
213 |
atcctacgaatcggcgatattataacgccctagcacataaaaatgcagtaacgatcagtactaaaggaactcacataagacttcatgagcagagattctt |
312 |
Q |
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| T |
43463517 |
atcctacgaaccggcgatattataacgccctagcacataaaaatgcagtaacaatcagtactaaaggaactcacataagacttcatgagcagagattctt |
43463616 |
T |
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| Q |
313 |
tgcttagggtccctctccaacatcttttttaccaaatctttagcactttctgagatcgttggccatggttccgattcaaaatcaagatctccatgtaaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463617 |
tgcttagggtccctctccaacatcttttttaccaaatctttagcactttctgagatcgttggccatggttccgattcaaaatcaagatctccatgtaaaa |
43463716 |
T |
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| Q |
413 |
tctgtctaaaaattcccgattcggtttctggaggttatagaaaaagtgattgtagctcaggcataaaaaatatattaagtagatcactaaataatatact |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43463717 |
tctgtctaaaaattcccgattcggtttctggaggttatagaaaaagtgattgtagctcaggcataaaaaatatattaagtagatcactaaataatatact |
43463816 |
T |
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| Q |
513 |
gacaagaaatgcataacagacacaaaaatccaagataattacaacagaaact |
564 |
Q |
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| T |
43463817 |
gacaagaaatgcataacagacacacaaatccaagataattacaacagaaact |
43463868 |
T |
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