View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_42 (Length: 303)
Name: NF16003_low_42
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 3208741 - 3209005
Alignment:
| Q |
22 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
121 |
Q |
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| T |
3208741 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
3208840 |
T |
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| Q |
122 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaacatcatcgtatggaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208841 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggccaacatcatcgtatggaag |
3208940 |
T |
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| Q |
222 |
ggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaatt |
286 |
Q |
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| T |
3208941 |
ggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaatt |
3209005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 3202774 - 3203031
Alignment:
| Q |
29 |
catccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtacc |
128 |
Q |
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| T |
3202774 |
catccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtacc |
3202873 |
T |
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| Q |
129 |
attagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaacatcatcgtatggaagggatgaa |
228 |
Q |
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| T |
3202874 |
attggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaa |
3202973 |
T |
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| Q |
229 |
tttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaatt |
286 |
Q |
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| T |
3202974 |
tttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaatt |
3203031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 3216680 - 3216953
Alignment:
| Q |
22 |
actgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattg |
121 |
Q |
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||||||||||||||||| |||||| ||| ||| |||| |||||| | || ||||||||||||| |||||||||||||||| |||||||||||| ||| |
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| T |
3216680 |
actgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttg |
3216779 |
T |
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| Q |
122 |
cagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaacatcatcgtatggaag |
221 |
Q |
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| T |
3216780 |
ccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaag |
3216879 |
T |
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| Q |
222 |
ggatgaattt---------acaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaatt |
286 |
Q |
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||| ||||| || ||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
3216880 |
agataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaatt |
3216953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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