View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_45 (Length: 297)
Name: NF16003_low_45
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_45 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 3083007 - 3083292
Alignment:
| Q |
12 |
cctgtgttgttatttgccaaaaacacatttaatttggtccttagttgcatcaatgatgaacgtttcctagtaaagataagatccttaggctcagtgcttt |
111 |
Q |
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| T |
3083007 |
cctgtgttgttatttgccaaaaacacatttaatttggtccttagttgcatcaatgatgaacgtttcctagtaaagataagatccttaggctcagtacttt |
3083106 |
T |
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| Q |
112 |
cacctctatatgctttccaacaatcatctgctgctagaagctgcaaaaacaaagtagtaactatcatttagatgctgcaacttaattaatatttcctctc |
211 |
Q |
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| T |
3083107 |
cacctctatatgctttccaacaatcatctgctgctagaagctgcaaaaacaaagtagtaactatcatttagatgctgcaacttaattaatatttcatctc |
3083206 |
T |
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| Q |
212 |
ttatataataagttatttctatagttgatgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaac |
297 |
Q |
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| T |
3083207 |
ttatataataagttatttctatagttgatgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaac |
3083292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 3099165 - 3099231
Alignment:
| Q |
231 |
tatagttgatgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaac |
297 |
Q |
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| T |
3099165 |
tatagttgatgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaac |
3099231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 3093308 - 3093374
Alignment:
| Q |
231 |
tatagttgatgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaac |
297 |
Q |
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| T |
3093308 |
tatagttgatgagcaaaccgattttcgaagatggagaatgcagtttccattagcatcaaataagaac |
3093374 |
T |
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