View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16003_low_5 (Length: 569)

Name: NF16003_low_5
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16003_low_5
NF16003_low_5
[»] chr3 (12 HSPs)
chr3 (16-433)||(28689746-28690164)
chr3 (417-548)||(28689478-28689609)
chr3 (16-213)||(51926013-51926205)
chr3 (454-547)||(26279434-26279527)
chr3 (474-547)||(8420240-8420313)
chr3 (450-511)||(42453302-42453363)
chr3 (474-548)||(52374572-52374646)
chr3 (73-146)||(2394819-2394891)
chr3 (73-134)||(45163166-45163226)
chr3 (482-547)||(29598030-29598095)
chr3 (482-547)||(54574946-54575011)
chr3 (330-374)||(23641470-23641514)
[»] chr2 (21 HSPs)
chr2 (27-112)||(28775081-28775166)
chr2 (31-146)||(20262899-20263013)
chr2 (450-547)||(29694270-29694367)
chr2 (450-547)||(37182556-37182653)
chr2 (450-547)||(16227487-16227584)
chr2 (450-547)||(38400684-38400781)
chr2 (450-547)||(13800664-13800760)
chr2 (450-547)||(21665819-21665916)
chr2 (450-547)||(24035664-24035761)
chr2 (70-160)||(2062051-2062140)
chr2 (450-511)||(11952761-11952822)
chr2 (315-371)||(37182373-37182429)
chr2 (451-546)||(12134160-12134254)
chr2 (474-547)||(11912877-11912950)
chr2 (481-547)||(10252324-10252391)
chr2 (91-137)||(27738984-27739030)
chr2 (156-215)||(28778034-28778096)
chr2 (321-374)||(21666040-21666093)
chr2 (321-370)||(24035880-24035929)
chr2 (77-137)||(29829775-29829835)
chr2 (68-140)||(42236673-42236745)
[»] chr1 (7 HSPs)
chr1 (31-146)||(24886443-24886557)
chr1 (450-548)||(26803847-26803945)
chr1 (450-547)||(39134841-39134938)
chr1 (450-494)||(10926115-10926159)
chr1 (330-374)||(39135069-39135113)
chr1 (73-135)||(24450634-24450695)
chr1 (88-146)||(46694043-46694101)
[»] chr4 (13 HSPs)
chr4 (399-511)||(45656027-45656129)
chr4 (456-547)||(37746839-37746930)
chr4 (450-547)||(36118575-36118672)
chr4 (450-537)||(40217122-40217209)
chr4 (460-531)||(24396837-24396908)
chr4 (450-547)||(2135436-2135533)
chr4 (450-547)||(15734988-15735085)
chr4 (450-511)||(52468178-52468239)
chr4 (450-541)||(36362994-36363085)
chr4 (474-547)||(39329510-39329583)
chr4 (314-374)||(15734798-15734858)
chr4 (66-146)||(26070602-26070682)
chr4 (450-546)||(27111923-27112018)
[»] chr7 (9 HSPs)
chr7 (451-548)||(26917799-26917896)
chr7 (450-552)||(23020595-23020697)
chr7 (450-547)||(27237541-27237638)
chr7 (450-547)||(23858960-23859057)
chr7 (454-547)||(7398342-7398435)
chr7 (450-510)||(20153090-20153150)
chr7 (315-373)||(26918031-26918089)
chr7 (93-137)||(2569353-2569397)
chr7 (474-545)||(17800341-17800412)
[»] chr8 (13 HSPs)
chr8 (450-547)||(41677292-41677389)
chr8 (450-546)||(15167533-15167629)
chr8 (450-547)||(8646087-8646184)
chr8 (450-547)||(34048826-34048923)
chr8 (450-511)||(15078647-15078708)
chr8 (75-156)||(26129924-26130004)
chr8 (474-547)||(25561625-25561698)
chr8 (88-135)||(37987711-37987758)
chr8 (457-508)||(38009294-38009345)
chr8 (315-374)||(39332581-39332640)
chr8 (474-547)||(7944641-7944714)
chr8 (313-374)||(7944773-7944834)
chr8 (482-547)||(34789981-34790046)
[»] chr6 (3 HSPs)
chr6 (450-547)||(20611680-20611777)
chr6 (450-546)||(2477704-2477799)
chr6 (315-374)||(20611504-20611563)
[»] chr5 (10 HSPs)
chr5 (450-546)||(2024757-2024853)
chr5 (450-547)||(34425790-34425887)
chr5 (450-511)||(40794477-40794538)
chr5 (450-511)||(2411976-2412037)
chr5 (450-547)||(11242434-11242531)
chr5 (450-511)||(24395625-24395686)
chr5 (450-509)||(10543569-10543628)
chr5 (450-511)||(1366679-1366739)
chr5 (450-511)||(26719048-26719109)
chr5 (450-511)||(26988792-26988853)
[»] scaffold0018 (1 HSPs)
scaffold0018 (450-546)||(173630-173726)
[»] scaffold1320 (1 HSPs)
scaffold1320 (450-511)||(1243-1304)
[»] scaffold0022 (2 HSPs)
scaffold0022 (479-547)||(39999-40067)
scaffold0022 (479-547)||(138059-138127)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 28690164 - 28689746
Alignment:
Q  16 atgaacaagcgacggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28690164 atgaacaagcgacagacacagtccaccaacggcacaaccgatgacagatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 28690065  T
Q  116 ctacgcaccaaactctttcgagtaatatctgtcaaatcaaaatcaaatccacacagataaacataactttttgtaacct-atcctaaatcaagaaaatcc 214  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28690064 ctacgcaccaaactcttttgagcaatatctgtcgaatcaaaatcaaatccacacagataaacataactttttgtaaccagatcctaaatcaagaaaatcc 28689965  T
Q  215 aattttatttacttcaatcaggggaggacccagacattcaatttgagtgtggttaaaatatcaaatgaactataatgcaaattaaaatactacatattaa 314  Q
    |  |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  28689964 agatttatttacttcaatcaggggaggacccagacattcgatttgggtgtggttagaatatcaaatgaactatgatgcaaattaaaatactatatattaa 28689865  T
Q  315 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatggacctnnnnnnnnnttatagcctagtagtactaatgttgaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||| |||||||| ||| |||||    
T  28689864 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatggacctaaaaaaaaattatagcccagtagtaccaatattgaa 28689765  T
Q  415 ttaaatgttattaatatat 433  Q
    |||||||||||||||||||    
T  28689764 ttaaatgttattaatatat 28689746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 417 - 548
Target Start/End: Complemental strand, 28689609 - 28689478
Alignment:
Q  417 aaatgttattaatatattaattgaaagtgtttgttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgcccta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |    
T  28689609 aaatgttattaatatattaattgaaagtgtttgttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcctattagaattggatca 28689510  T
Q  517 tcttgcttttggtgtgaggtgggtgttttttg 548  Q
    ||||||||||||||| ||||||||||||||||    
T  28689509 tcttgcttttggtgttaggtgggtgttttttg 28689478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 51926013 - 51926205
Alignment:
Q  16 atgaacaagcgacggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 115  Q
    |||| ||||| |||||||| |||||||||| ||||||| ||||||| |||||||  ||||  ||||||| |||||||||||||||| ||| |||||||||    
T  51926013 atgagcaagcaacggacactgtccaccaacagcacaactgatgacggatgaaacggttctataggtacggttaacgactactaccgtcaacacggagcga 51926112  T
Q  116 ctacgcaccaaactctttcgagtaatatctgtcaaatcaaaatcaaatccacacagataaacataactttttgtaacc-tatcctaaatcaagaaaatc 213  Q
    | ||||||| |||||||||||| |||| | |||       ||||||||||||||||||||| | ||||||||||||||  |||||||||||||| ||||    
T  51926113 cgacgcacctaactctttcgagcaatacccgtc------gaatcaaatccacacagataaatagaactttttgtaaccagatcctaaatcaagataatc 51926205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 26279434 - 26279527
Alignment:
Q  454 tccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||| || ||||||||| ||||||||||||| || ||||| |||||    || ||||||||||||| |||||||||||||||    
T  26279434 tccccgatttgatttcattttcctcttctattgtcttgttttaggcctattaaaattgggtcatgttgcttttggtgttaggtgggtgtttttt 26279527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 474 - 547
Target Start/End: Original strand, 8420240 - 8420313
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||| |||||||||||| ||||| ||||||||||||||   | ||||||||||||||| |||||||||||||||    
T  8420240 tccttttctgttgtcttattttaggcatattagaattgggttctcttgcttttggtgttaggtgggtgtttttt 8420313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 42453302 - 42453363
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||||||||||||||||| || || |||||||||||||||||||| || |||||||||||    
T  42453302 ttcttccccgatttgatttccttttcttcttctgttgtcttgttttaggcctattagaattg 42453363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 474 - 548
Target Start/End: Original strand, 52374572 - 52374646
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttttg 548  Q
    |||| |||||||||||||||||| || |||||||||||     ||||||||||||||| ||||||||||||||||    
T  52374572 tccttttctgttgtcttgttttaggcctattagaattgagtcctcttgcttttggtgttaggtgggtgttttttg 52374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 2394819 - 2394891
Alignment:
Q  73 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 146  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| ||||||||| |||||||| | ||||||    
T  2394819 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaaccctttcgagcattatctg 2394891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 45163226 - 45163166
Alignment:
Q  73 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttc 134  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| |||||||||||||||    
T  45163226 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaactctttc 45163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 547
Target Start/End: Original strand, 29598030 - 29598095
Alignment:
Q  482 tgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||| || ||||||||||     |||||||||||||||| |||||| ||||||||    
T  29598030 tgttgtcttgttttaggcctattagaattaggtcatcttgcttttggtgttaggtggatgtttttt 29598095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 547
Target Start/End: Complemental strand, 54575011 - 54574946
Alignment:
Q  482 tgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||| |||||||| ||||||||||||||    ||||| |||||| ||| |||||||||||||||    
T  54575011 tgttgttttgttttaggcatattagaattgagtcatcttacttttgttgttaggtgggtgtttttt 54574946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 23641514 - 23641470
Alignment:
Q  330 gggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||||||||||  ||||||||||||||| | ||||||||||||||    
T  23641514 gggtgtgcaaaccgctcaatggaaccgggcctccccaaggtatgg 23641470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 28775081 - 28775166
Alignment:
Q  27 acggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggag 112  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  28775081 acggacacagtccaccaacggcacaaccgataactgatgaaacagttctgaaggtacgattaatgactactaccgccaacacggag 28775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 20262899 - 20263013
Alignment:
Q  31 acacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactc 130  Q
    ||||| |||||| |||||||||||| |||| ||| | ||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  20262899 acacaatccacctacggcacaaccg-tgacaaataatacagttctaaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactc 20262997  T
Q  131 tttcgagtaatatctg 146  Q
    ||||||| || |||||    
T  20262998 tttcgagcaacatctg 20263013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 29694270 - 29694367
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||||     ||||||||||||||| |||||||||||||||    
T  29694270 ttcttccccgatttgatttctttttcctcttctgttgtcttgttttagacctattagaattgggtcctcttgcttttggtgttaggtgggtgtttttt 29694367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 37182556 - 37182653
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || ||||||||| ||||||||||||| || |||||||||||    |||||||||||| ||| |||||||||||||||    
T  37182556 ttcttccccgatttgatttccttttcctcttctattgtcttgttttaggcctattagaattgggtcatcttgcttttgctgttaggtgggtgtttttt 37182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 16227584 - 16227487
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| |  |||||||||||    ||||| |||||||||| ||||||||| |||||    
T  16227584 ttcttccccgatttgatttctttttcctcttttgttgtcttgttttatgtctattagaattgagtcatcttacttttggtgttaggtgggtggttttt 16227487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 38400684 - 38400781
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||| |||||||||  || |||| |||||||||||||||||| || ||||||||| |    |||||||||||||||| |||||||||||||||    
T  38400684 ttcttccccaatttgattttcttttcctgttctgttgtcttgttttaggcctattagaatagggtcatcttgcttttggtgttaggtgggtgtttttt 38400781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 13800760 - 13800664
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||| ||||||||||||| || |||||||||||||||||| |||| || |||||||||||     ||||||||||||||| ||||| |||||||||    
T  13800760 ttcttctccgatttgatttcattttcctcttctgttgtcttg-tttaggcctattagaattggatcttcttgcttttggtgttaggtgtgtgtttttt 13800664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 21665916 - 21665819
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||| |||||||||| || ||||| ||||||||||||||||| |  |||||||||||     ||||||||| ||||| |||||||||||||||    
T  21665916 ttcttccccaatttgatttccttttcctcatctgttgtcttgttttatgtctattagaattgggtcctcttgctttaggtgttaggtgggtgtttttt 21665819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 24035761 - 24035664
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||| |  ||||||||||      |||||||||| |||| |||||||||||||||    
T  24035761 ttcttccctgatttgatttccttttcctcttctgttgtcttgttttaggtctattagaattaggtcctcttgcttttagtgttaggtgggtgtttttt 24035664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 2062140 - 2062051
Alignment:
Q  70 aattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctgtcaaatcaaaatca 160  Q
    |||||||||||||| || || ||||||||||||||| |||||||| ||| ||||| |||||||||||| || ||||| ||| |||| ||||    
T  2062140 aattctgaaggtac-ataaatgactactaccgccaacacggagcgtctaagcacccaactctttcgagcaacatctgacaactcaagatca 2062051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 11952822 - 11952761
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||||||||||||||||| || ||||||||  ||||||||||||| || |||||||||||    
T  11952822 ttcttccccgatttgatttccttttcctcttccattgtcttgttttaggcctattagaattg 11952761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 37182373 - 37182429
Alignment:
Q  315 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggta 371  Q
    |||||||||| ||| ||||||||||||||||||||||| | |||| |||||||||||    
T  37182373 cagggtcggaccttggggtgtgcaaagagctcaatggagctggacctccccaaggta 37182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 546
Target Start/End: Complemental strand, 12134254 - 12134160
Alignment:
Q  451 tcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    ||||||| ||| ||||||| || ||||||||| ||||||||||||| || |||||||||||   | ||||||||||||||| |||||  |||||||    
T  12134254 tcttccctgatatgatttccttttcctcttct-ttgtcttgttttaggcctattagaattgagttctcttgcttttggtgttaggtgtatgttttt 12134160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 11912950 - 11912877
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||| ||||||||||||||| || |||||||||||    |||||| ||||||||| ||||| |||||||||    
T  11912950 tcctcttttgttgtcttgttttaggcctattagaattgggtcatcttgattttggtgttaggtgagtgtttttt 11912877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 547
Target Start/End: Original strand, 10252324 - 10252391
Alignment:
Q  481 ctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtg-tgaggtgggtgtttttt 547  Q
    |||||||||||||||| || |||||||||||    ||||||||||||||| | |||||||||||||||    
T  10252324 ctgttgtcttgttttaggcctattagaattgggtcatcttgcttttggtgtttaggtgggtgtttttt 10252391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 27739030 - 27738984
Alignment:
Q  91 gactactaccgccaatacggagcgactacgcaccaaactctttcgag 137  Q
    ||||||||||||||| |||||||| | | ||||||||||||||||||    
T  27739030 gactactaccgccaacacggagcgtcaatgcaccaaactctttcgag 27738984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 28778034 - 28778096
Alignment:
Q  156 aatcaaatccacacagat-aaacataacttttt-gtaacct-atcctaaatcaagaaaatcca 215  Q
    |||||||||||||||||| ||||| |||||||| ||||||  |||||||||||||||||||||    
T  28778034 aatcaaatccacacagatgaaacagaacttttttgtaaccagatcctaaatcaagaaaatcca 28778096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 21666093 - 21666040
Alignment:
Q  321 cggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||| ||| |||||||||| |||||||||||||| || | ||||||||||||||    
T  21666093 cggaccttggggtgtgcaaggagctcaatggaactgggcctccccaaggtatgg 21666040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Complemental strand, 24035929 - 24035880
Alignment:
Q  321 cggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggt 370  Q
    ||||| || |||||||||| ||||||||||||||||| | ||||||||||    
T  24035929 cggattttggggtgtgcaaggagctcaatggaaccgggcctccccaaggt 24035880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 29829835 - 29829775
Alignment:
Q  77 aaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgag 137  Q
    |||||||||| ||| || ||||||| ||| | |||||| ||||||||||||| ||||||||    
T  29829835 aaggtacgataaacaacaactaccgtcaacatggagcgtctacgcaccaaaccctttcgag 29829775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 42236673 - 42236745
Alignment:
Q  68 acaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaa 140  Q
    |||||||| |||||||||  |||||| ||||||| ||| | |||||  ||||||||| | |||||||||||||    
T  42236673 acaattcttaaggtacgacgaacgacgactaccgtcaacatggagcatctacgcacctagctctttcgagtaa 42236745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 24886557 - 24886443
Alignment:
Q  31 acacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactc 130  Q
    ||||| |||||| |||||||||||| ||||| ||   ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  24886557 acacaatccacctacggcacaaccg-tgacggatattacagttctgaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactc 24886459  T
Q  131 tttcgagtaatatctg 146  Q
    ||||||| || |||||    
T  24886458 tttcgagcaacatctg 24886443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 450 - 548
Target Start/End: Original strand, 26803847 - 26803945
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttttg 548  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||  | |||||||||||   ||||||||||||||||| ||||| ||||||||||    
T  26803847 ttctttcccgatttgatttctttttcctcttctgttgtcttgttttagtcctattagaattgagttatcttgcttttggtgttaggtgagtgttttttg 26803945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 39134938 - 39134841
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||| |||||||||||     ||||||||||||||| |||||||||||||||    
T  39134938 ttcttccccgatttgattttcttttcctcttctgttgtcttgttttaagcctattagaattgggtcctcttgcttttggtgttaggtgggtgtttttt 39134841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 10926159 - 10926115
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttt 494  Q
    |||||| ||||||||||||| || |||||||||||||||||||||    
T  10926159 ttcttctccgatttgatttccttttcctcttctgttgtcttgttt 10926115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 39135113 - 39135069
Alignment:
Q  330 gggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    ||||||||||||||||||||||||| || | ||||||||||||||    
T  39135113 gggtgtgcaaagagctcaatggaactgggcctccccaaggtatgg 39135069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 24450634 - 24450695
Alignment:
Q  73 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcg 135  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  24450634 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaaccctttcg 24450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 46694043 - 46694101
Alignment:
Q  88 aacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 146  Q
    |||||||||||||||||| || ||||| ||||||||| ||| |||||| | ||||||||    
T  46694043 aacgactactaccgccaacacagagcgtctacgcacctaaccctttcgggaaatatctg 46694101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 399 - 511
Target Start/End: Original strand, 45656027 - 45656129
Alignment:
Q  399 tagtactaatgttgaattaaatgttattaatatattaattgaaagtgtttgttcttccccgatttgatttctttctcctcttctgttgtcttgttttaag 498  Q
    |||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |    
T  45656027 tagtactaatgttgaattaaatgttattaat---------gaaagtgtttgttcttccccaatttgatttctttttcctctt-tgttgtcttgttttagg 45656116  T
Q  499 catattagaattg 511  Q
    | |||||||||||    
T  45656117 cctattagaattg 45656129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 456 - 547
Target Start/End: Complemental strand, 37746930 - 37746839
Alignment:
Q  456 cccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||    |||||||||||||||| ||||||| |||||||    
T  37746930 cccgatttgatttctttttcctcttctgttgtcttgttttaggcctattagaattgggtcatcttgcttttggtgttaggtgggcgtttttt 37746839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 36118672 - 36118575
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || ||||||||| ||||||| ||||| || |||||||||||    |||||||||||||||| |||||| ||||||||    
T  36118672 ttcttccccgatttgatttccttttcctcttctattgtcttcttttaggcctattagaattgggtcatcttgcttttggtgttaggtggatgtttttt 36118575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 450 - 537
Target Start/End: Original strand, 40217122 - 40217209
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtg 537  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||    || ||||||||||||| |||||    
T  40217122 ttcttccccgatttgatttctttttcctcttttgttgtcttgttttaggcctattagaattgggtcattttgcttttggtgttaggtg 40217209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 460 - 531
Target Start/End: Original strand, 24396837 - 24396908
Alignment:
Q  460 atttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgt 531  Q
    |||||||||| || ||||||| ||||||||||||||||||||||||||||||   | |||||||||||||||    
T  24396837 atttgatttccttttcctcttttgttgtcttgttttaagcatattagaattgagttctcttgcttttggtgt 24396908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 2135533 - 2135436
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || | ||||| |||| |||||||||| || |||||||||||     ||||||||||||||| ||||  |||||||||    
T  2135533 ttcttccccgatttgatttcatttttctcttttgttatcttgttttaggcttattagaattgggtcctcttgcttttggtgttaggtcagtgtttttt 2135436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 15734988 - 15735085
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||| ||||||||||||| || ||||||||||||  ||||||||| || | |||||||||     ||||||||||||||| |||||| ||||||||    
T  15734988 ttcttctccgatttgatttccttttcctcttctgttcacttgttttaggcctgttagaattgggtcttcttgcttttggtgttaggtggatgtttttt 15735085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 52468178 - 52468239
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||||||||||| ||||| || ||||||| ||||||||||||||| || |||||||||||    
T  52468178 ttcttccccgatttcatttccttttcctcttatgttgtcttgttttaggcctattagaattg 52468239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 541
Target Start/End: Complemental strand, 36363085 - 36362994
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtg 541  Q
    |||||||| ||||||||||| || |||||||| ||||||||||||||  | |||||||||||    |||| |||||||||||  ||||||||    
T  36363085 ttcttccctgatttgatttcattttcctcttcagttgtcttgttttagacctattagaattgagtcatctcgcttttggtgttgggtgggtg 36362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 39329583 - 39329510
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaatt-gccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||||||||||| || |||||||||| |  || ||||||||||||||| | |||||||||||||    
T  39329583 tcctcttctgttgtcttgttttaggcctattagaatttggtct-tcttgcttttggtgttatgtgggtgtttttt 39329510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 15734798 - 15734858
Alignment:
Q  314 acagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||||||| || ||| || ||||||| ||||| ||||||||||||| ||||||||||||||    
T  15734798 acagggtcagaccttgggatgtgcaaggagctgaatggaaccggacctccccaaggtatgg 15734858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 26070682 - 26070602
Alignment:
Q  66 aaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 146  Q
    ||||| || ||||||||| ||||| ||||||||||||| | |||||||||| | | |||||||||| ||||| || |||||    
T  26070682 aaacagttatgaaggtacaattaatgactactaccgccgacacggagcgacaatgaaccaaactctatcgagcaacatctg 26070602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 546
Target Start/End: Original strand, 27111923 - 27112018
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    |||||| | ||||||||||| || ||||||| |||| ||||||||| ||| |||||||||||     |||||||||| |||| ||||||||||||||    
T  27111923 ttcttctctgatttgatttccttttcctcttttgttttcttgtttt-agcctattagaattgagtcctcttgctttttgtgttaggtgggtgttttt 27112018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 451 - 548
Target Start/End: Complemental strand, 26917896 - 26917799
Alignment:
Q  451 tcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttttg 548  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||     ||||||||||||||| ||||| ||||||||||    
T  26917896 tcttccccgatttgatttcattttcctcttctgttgtcttgttttaggcttattagaattgggtcttcttgcttttggtgttaggtgagtgttttttg 26917799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 450 - 552
Target Start/End: Complemental strand, 23020697 - 23020595
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttttga 549  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||  | |||||||||||    || || |||||||||| |||| ||||||||||||    
T  23020697 ttcttccccgatttgatttctttttcctcttttgttgtcttgttttagacctattagaattgggtcatattacttttggtgttaggtaggtgttttttga 23020598  T
Q  550 gag 552  Q
    |||    
T  23020597 gag 23020595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 27237638 - 27237541
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||| || |||||||||||    ||||||||| |||||| ||||| |||||||||    
T  27237638 ttcttccccgatttgatttcctttttctcttttgttgtcttgttttaggcctattagaattgggtcatcttgcttatggtgttaggtgagtgtttttt 27237541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 23858960 - 23859057
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||| |||||||||| || |||||||| ||| |||||||||| || |||||||||||     |||||| |||||||| |||||||||||||||    
T  23858960 ttcttccccaatttgatttcattttcctcttccgttatcttgttttaggcctattagaattgggtcctcttgcatttggtgttaggtgggtgtttttt 23859057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 547
Target Start/End: Original strand, 7398342 - 7398435
Alignment:
Q  454 tccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||| || | ||||| ||||||||||||||| || |||||||||||     ||||||||||||||| | |||| ||||||||    
T  7398342 tccccgatttgatttccttttgctcttttgttgtcttgttttaggcctattagaattgggtcctcttgcttttggtgttacgtggatgtttttt 7398435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 510
Target Start/End: Original strand, 20153090 - 20153150
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaatt 510  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||| || ||||||||||    
T  20153090 ttcttccccgatttgatttcttttttctcatatgttgtcttgttttaggcctattagaatt 20153150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 26918089 - 26918031
Alignment:
Q  315 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatg 373  Q
    ||||||||||| |||||||||||||||||||||||||| | || |||| | ||||||||    
T  26918089 cagggtcggattttagggtgtgcaaagagctcaatggagctgggcatctctaaggtatg 26918031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 2569397 - 2569353
Alignment:
Q  93 ctactaccgccaatacggagcgactacgcaccaaactctttcgag 137  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||    
T  2569397 ctactactgccaatccggagtgactacgcaccaaactctttcgag 2569353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 545
Target Start/End: Complemental strand, 17800412 - 17800341
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttt 545  Q
    |||| |||||||||||||||||| || |||||||||||     ||||||||||||||| |||||| ||||||    
T  17800412 tccttttctgttgtcttgttttaggcctattagaattgggtcctcttgcttttggtgttaggtggatgtttt 17800341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 41677389 - 41677292
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| || ||||||||| |     ||||||||||||||| |||||||||||||||    
T  41677389 ttcttccccgatttgatttccttttcctcttatgttgtcttgttttaggcctattagaatcgggtcctcttgcttttggtgttaggtgggtgtttttt 41677292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 546
Target Start/End: Complemental strand, 15167629 - 15167533
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||| || |||||||||||     |||| |||||||||| |||||||| |||||    
T  15167629 ttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcctattagaattgggtcctcttacttttggtgttaggtgggttttttt 15167533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 8646087 - 8646184
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||| || |||| |||||     |||||||||||||||| ||||| |||||||||    
T  8646087 ttcttccctgatttgatttccttttcctcttatgttgtcttgttttaggcctattcgaattaggtcatcttgcttttggtgttaggtgtgtgtttttt 8646184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 34048923 - 34048826
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||||| || |||||||||||||||||||  || || ||||||||| |  | || || |||||||||| ||||| |||||||||    
T  34048923 ttcttccccgatttgatttccttttcctcttctgttgtcttgtgctaggcctattagaatcgagccattttacttttggtgttaggtgagtgtttttt 34048826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 15078647 - 15078708
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||| || | |||||||||    
T  15078647 ttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcctgttagaattg 15078708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 26130004 - 26129924
Alignment:
Q  75 tgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctgtcaaatcaaa 156  Q
    |||||||||| |||| | |||| |||||||| ||||||||||||||||||||||||| ||||| || ||||| | |||||||    
T  26130004 tgaaggtacg-ttaatgtctaccaccgccaacacggagcgactacgcaccaaactctctcgagcaacatctgacgaatcaaa 26129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 25561698 - 25561625
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||| |||||||||||||||||| || |||||||||||     ||||||||||||||| ||||| |||||||||    
T  25561698 tcctattctgttgtcttgttttaggcctattagaattgggtcctcttgcttttggtgttaggtgagtgtttttt 25561625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 37987711 - 37987758
Alignment:
Q  88 aacgactactaccgccaatacggagcgactacgcaccaaactctttcg 135  Q
    |||||||||||||||||| |||||||| ||||||||| ||| ||||||    
T  37987711 aacgactactaccgccaacacggagcgtctacgcacctaaccctttcg 37987758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 508
Target Start/End: Complemental strand, 38009345 - 38009294
Alignment:
Q  457 ccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaa 508  Q
    ||||||| ||||| || ||||||||||||||||||||||| || ||||||||    
T  38009345 ccgatttaatttccttttcctcttctgttgtcttgttttaggcctattagaa 38009294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 374
Target Start/End: Complemental strand, 39332640 - 39332581
Alignment:
Q  315 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||||||||| ||| || ||||||||  |||||||||||| |||||||||||||| ||||    
T  39332640 cagggtcggaccttgggatgtgcaaaccgctcaatggaactggacatccccaaggcatgg 39332581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 547
Target Start/End: Complemental strand, 7944714 - 7944641
Alignment:
Q  474 tcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||| |||| ||||||||||||| || ||||| |||||     ||||||||||||||| |||||||||||||||    
T  7944714 tccttttctattgtcttgttttaggcctattaaaattgtgtcctcttgcttttggtgttaggtgggtgtttttt 7944641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 374
Target Start/End: Complemental strand, 7944834 - 7944773
Alignment:
Q  313 aacagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||||||||||| ||| |||||||||||  | |||||||||| || | ||||||||||||||    
T  7944834 aacagggtcggaccttggggtgtgcaaaccgttcaatggaactgggcttccccaaggtatgg 7944773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 547
Target Start/End: Complemental strand, 34790046 - 34789981
Alignment:
Q  482 tgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||  ||||| ||||||||||||||    ||||| |||||||||| |||||||||||||||    
T  34790046 tgttgtctaattttaggcatattagaattgggtcatcttacttttggtgttaggtgggtgtttttt 34789981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 20611680 - 20611777
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||||||    || || |||||||||| ||||| |||||||||    
T  20611680 ttcttccccgatttgatttctttttcctcttttgttgtcttgttttaggcctattagaattgggtcattttacttttggtgttaggtgagtgtttttt 20611777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 546
Target Start/End: Complemental strand, 2477799 - 2477704
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    |||||| | ||||||||||| || ||||||| |||| ||||||||| ||| |||||||||||     |||||||||| |||| ||||||||||||||    
T  2477799 ttcttctctgatttgatttccttttcctcttttgttttcttgtttt-agcctattagaattgagtcctcttgctttttgtgttaggtgggtgttttt 2477704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 374
Target Start/End: Original strand, 20611504 - 20611563
Alignment:
Q  315 cagggtcggatcttagggtgtgcaaagagctcaatggaaccggacatccccaaggtatgg 374  Q
    |||||||||| ||| ||||||||||||||||||||||| | || | |||| |||||||||    
T  20611504 cagggtcggaccttggggtgtgcaaagagctcaatggagctgggcctccctaaggtatgg 20611563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 450 - 546
Target Start/End: Complemental strand, 2024853 - 2024757
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||     ||||||||||||||| ||||| || |||||    
T  2024853 ttcttccccgatttgatttccttttcctcttatgttgtcttgttttaggcatattagaattgagtcctcttgcttttggtgttaggtgtgttttttt 2024757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 547
Target Start/End: Original strand, 34425790 - 34425887
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||| ||||||||||||||| || | | ||||||||||||||||||| || |||||||||||     ||||||||||||||| ||||| |||||||||    
T  34425790 ttctgccccgatttgatttcctttttcccttctgttgtcttgttttaggcctattagaattgagtcctcttgcttttggtgttaggtgagtgtttttt 34425887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 40794538 - 40794477
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||| || |||||||||||    
T  40794538 ttcttcccggatttgatttctttttcctcttttgttgtcttgttttaggcttattagaattg 40794477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 2411976 - 2412037
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    ||||||||| |||||||||| || ||||||| ||||||||||||||| || |||||||||||    
T  2411976 ttcttccccaatttgatttccttttcctcttatgttgtcttgttttaggcctattagaattg 2412037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 547
Target Start/End: Complemental strand, 11242531 - 11242434
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    ||||||||||||| |||||| || ||||||||| |||| |||||||| || |||||||||||     ||||||||||||||| ||  |||||||||||    
T  11242531 ttcttccccgattcgatttccttttcctcttctcttgttttgttttatgcctattagaattgggtcctcttgcttttggtgttagaggggtgtttttt 11242434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 24395625 - 24395686
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||||||||||||||||| || ||||||| ||||| |||||||||  | |||||||||||    
T  24395625 ttcttccccgatttgatttccttttcctcttatgttgccttgttttatacctattagaattg 24395686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 509
Target Start/End: Original strand, 10543569 - 10543628
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaat 509  Q
    ||||| |||||||||||||| || ||||||| ||||||||| ||||| || |||||||||    
T  10543569 ttctttcccgatttgatttccttttcctcttatgttgtcttattttaggcctattagaat 10543628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 1366739 - 1366679
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    ||||||||| |||||||||| || ||||||| ||||||||||||||| || |||| ||||||    
T  1366739 ttcttccccaatttgatttccttttcctctt-tgttgtcttgttttacgcctattggaattg 1366679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 26719109 - 26719048
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    ||||| || ||||||||||| || |||||||||||||| | |||||| || |||||||||||    
T  26719109 ttctttcctgatttgatttcattttcctcttctgttgtttagttttaggcctattagaattg 26719048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 26988853 - 26988792
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    ||||| || ||||||||||| || |||||||||||||| | |||||| || |||||||||||    
T  26988853 ttctttcctgatttgatttcattttcctcttctgttgtttagttttaggcctattagaattg 26988792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 546
Target Start/End: Complemental strand, 173726 - 173630
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgttttt 546  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||| || |||||||||||     ||||||||||||||| | || |||||||||    
T  173726 ttcttccctgatttgatttccttttcctcttctgttgtctagttttaggcctattagaattgagacctcttgcttttggtgttaagtaggtgttttt 173630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 1243 - 1304
Alignment:
Q  450 ttcttccccgatttgatttctttctcctcttctgttgtcttgttttaagcatattagaattg 511  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||| || | |||||||||    
T  1243 ttcttctccgatttgatttccttttcctcttctgttgtcttgttttaggcctgttagaattg 1304  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 39999 - 40067
Alignment:
Q  479 ttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||| || |||||||||||     |||||||||| |||| |||||| ||||||||    
T  39999 ttctgttgtcttgttttaggcctattagaattgggtcctcttgctttttgtgttaggtggatgtttttt 40067  T

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Target: scaffold0022; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 547
Target Start/End: Original strand, 138059 - 138127
Alignment:
Q  479 ttctgttgtcttgttttaagcatattagaattgccctatcttgcttttggtgtgaggtgggtgtttttt 547  Q
    |||||||||||||||||| || |||||||||||     |||||||||| |||| |||||| ||||||||    
T  138059 ttctgttgtcttgttttaggcctattagaattgggtcctcttgctttttgtgttaggtggatgtttttt 138127  T

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