View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_51 (Length: 276)
Name: NF16003_low_51
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 34258727 - 34258493
Alignment:
| Q |
30 |
aaaacaatgtaagctgctttggcacccaaaa--ttgtttcaggataagaaaatgttatactact-catggtggatgaataatcacatatgtaaggcatgt |
126 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||| |
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| T |
34258727 |
aaaacaatgtaagctgctttggcacccaaaaaattgtttcaggataagaaaatgttatacgacttcacggtggatgaataagcacatatgtaaggcatgt |
34258628 |
T |
|
| Q |
127 |
gtat---atattagaaaatgggaagaacctgaacatccatattcgcagtccggtaggaataagttctaggtatatattgagcattgttctaggagaatcc |
223 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
34258627 |
gtattatatattagaaaatgggaagaacctgaacatccatattcgcagtccggtaggaataagttctcggtatatattgagcactgttctaggagaatcc |
34258528 |
T |
|
| Q |
224 |
ttccagttaatagctaccacagcactggaatgaac |
258 |
Q |
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||||||||||||||||||||| ||||| ||||||| |
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| T |
34258527 |
ttccagttaatagctaccacaacactgtaatgaac |
34258493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 26631239 - 26631138
Alignment:
| Q |
149 |
aacctgaacatccatattcgcagtccggtaggaataagttctaggtatatattgagcattgttctaggagaatccttccagttaatagctaccacagcac |
248 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||| || | |||| ||||||||||||||| || |||||||| ||| |
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| T |
26631239 |
aacctgaatatccatattcgcagcccggtaggaataagttcacgatatatattgagcactgatgtaggtgaatccttccagttagtacctaccacatcac |
26631140 |
T |
|
| Q |
249 |
tg |
250 |
Q |
| |
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|| |
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| T |
26631139 |
tg |
26631138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 250
Target Start/End: Complemental strand, 26639092 - 26638991
Alignment:
| Q |
149 |
aacctgaacatccatattcgcagtccggtaggaataagttctaggtatatattgagcattgttctaggagaatccttccagttaatagctaccacagcac |
248 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| | ||||||||||||| || ||||| ||||||||||||||| || |||||||| ||| |
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| T |
26639092 |
aacctgaatatccatattcgcagcccggtaggaataagttcacgatatatattgagcactgacctaggtgaatccttccagttagtacctaccacatcac |
26638993 |
T |
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| Q |
249 |
tg |
250 |
Q |
| |
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|| |
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|
| T |
26638992 |
tg |
26638991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 26645077 - 26644995
Alignment:
| Q |
149 |
aacctgaacatccatattcgcagtccggtaggaataagttctaggtatatattgagcattgttctaggagaatccttccagtt |
231 |
Q |
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|||||||| ||||||||||| || || |||||||||||||| | ||||| | ||| | |||||||||||||||||||||||| |
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| T |
26645077 |
aacctgaatatccatattcgtagaccagtaggaataagttcacgatatatgtcgagtactgttctaggagaatccttccagtt |
26644995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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