View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_52 (Length: 269)
Name: NF16003_low_52
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 2622880 - 2622685
Alignment:
| Q |
60 |
cgggaagaatcggaagagagtggtcgcaaagctagtccattctttgttcttattatttttattactgcattatgttacttcacagcatatgcaataaaat |
159 |
Q |
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| T |
2622880 |
cgggaagaatcggaagagagtggtcgcaaagctagtccattctttgttcttattatttttattactgcattatgttacttcacagcatatgcaataaaat |
2622781 |
T |
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| Q |
160 |
tgtgcatcaaggactgctccagaaattttcttttcaacatagtaacccaggtatatcgatataatcatccgcggttatcaaaaaattatccatgtg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2622780 |
tgtgcatcaaggactgctccagaaattttcttttcaacataggaacccaggtatatccatataatcatccgcggttatcaaaaaattatccatgtg |
2622685 |
T |
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