View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_6 (Length: 569)
Name: NF16003_low_6
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 11442353 - 11442903
Alignment:
| Q |
1 |
tgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaa |
100 |
Q |
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| T |
11442353 |
tgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaa |
11442452 |
T |
|
| Q |
101 |
gttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaaggatacaacgtcga |
200 |
Q |
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| T |
11442453 |
gttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgaggatgagaaaaaatgaagcatacaacgtcga |
11442552 |
T |
|
| Q |
201 |
gaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgatggtattttgtggcat |
300 |
Q |
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| T |
11442553 |
gaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgatggtattttgtggcat |
11442652 |
T |
|
| Q |
301 |
gtcacagttgaaatttgctgccattgattttcagaaaaatgaatggtactggaaaattttaaatacagttatagttatgattgagtgtgtgaaatatgaa |
400 |
Q |
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| T |
11442653 |
gtcacagttgaaatttgcagccattgattttcagaaaagtgaatggtactggaaaattacaaatacagttatagttatgattgagtgtgtgaaatatgaa |
11442752 |
T |
|
| Q |
401 |
tgctcttataaaggactagggtctagtagagtttggttttcaattgaatttgtgtggttgaattgagaaaacagggtttagaggagtttggcttgcttga |
500 |
Q |
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| T |
11442753 |
tgctcttataaaggactagggtctagtagagtttggttttcaattgaatttgtgtggttgaattgagaaaacagggtttagaggagtttggcttgcttga |
11442852 |
T |
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| Q |
501 |
gagtgaaggttttgtgtttttcaacattggaatatgaattaggaacataac |
551 |
Q |
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| T |
11442853 |
gagtgaaggttttgtgtttttgaacattggaatatgaattaggaacataac |
11442903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 11452928 - 11453210
Alignment:
| Q |
3 |
caataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagt |
102 |
Q |
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| T |
11452928 |
caataggatagtaaattgaatttggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagt |
11453027 |
T |
|
| Q |
103 |
taacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaaggatacaacgtcgaga |
202 |
Q |
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| T |
11453028 |
taacaaatttgagtaagaaatggaagtcccagatgaggaatcaataagggctaaaaccccgtcatgagggtgagaaaaaatgaaggaaacaacatcgaga |
11453127 |
T |
|
| Q |
203 |
aaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgat |
285 |
Q |
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| T |
11453128 |
aaagggtctgttggaaggttcctaggagactgtaaactgctgtaaattccaggttttggtgaataccaatgagggtaagtgat |
11453210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 29911879 - 29911621
Alignment:
| Q |
14 |
taaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagttaacaaatttg |
113 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||||| |||||| |||| |
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| T |
29911879 |
taaattgaatttggaagtagaagcaaaacaacatcaccttgtgaaacacccattttgtgtaaagcagaagccatggatttgactaaaggtaacaactttg |
29911780 |
T |
|
| Q |
114 |
agtaagaaatggaagtcccagataaggaatcaataagggctaaaa-ccccgtcatgtggatgagaaaaaatgaaggatacaacgtcgagaaaagggtcgg |
212 |
Q |
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| T |
29911779 |
agtaagaaatggaagacccagatgaagaatcaataagggctaaaacccccatcatgagagtgtgaaaaaatgaaggaaacaatgtcaagaaaagggtcag |
29911680 |
T |
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| Q |
213 |
tcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaa |
271 |
Q |
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| T |
29911679 |
ttggaagatttctaggagtatgtatactgttgtaaattccagtttttgatgaataccaa |
29911621 |
T |
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Back To:
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