View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_64 (Length: 237)
Name: NF16003_low_64
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36551927 - 36551707
Alignment:
| Q |
1 |
aatctagtatacaaaatgaggtcaatatttaacgacaagaatagaccaatattaattaaacaatgcatttgtgcacatgcccaccaacagtattttaatt |
100 |
Q |
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| T |
36551927 |
aatctagtatccaaaatgaggtcaatatttaacgacaagaatagaccaatattaattaaacaatgcatttgtgcacatgcccaccaacagtattttaatt |
36551828 |
T |
|
| Q |
101 |
tctacgaaaccccacttctgcagcctagctaaagttgaaattgccattaaaggcaataaattttcttctccgtattacactctttaaatcttacattact |
200 |
Q |
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| T |
36551827 |
tctacaaaaccccacttctgcagcctagctaaagttgaaattgccattaaaggcaataaattttcttctccgtattacactctttaaatcttacattact |
36551728 |
T |
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| Q |
201 |
tggtacgtatcatcaccaaac |
221 |
Q |
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| T |
36551727 |
tggtacgtatcatcaccaaac |
36551707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 36549167 - 36549019
Alignment:
| Q |
68 |
tttgtgcacatgcccaccaacagtattttaatttctacgaaaccccacttctgcagcctagctaaagttgaaattgccattaaaggcaataaattttctt |
167 |
Q |
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||||||||||||| | ||||| | ||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
36549167 |
tttgtgcacatgctaaacaacaat-ttttaatttctacaaaaccccacttctgaagcatagctaaagttgaaattaccattaaaggcaataaa-tttctt |
36549070 |
T |
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| Q |
168 |
ctccgtattacactctttaaatcttacattacttggtacgtatcatcaccaa |
219 |
Q |
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| T |
36549069 |
ctccgtattacactcttt-aatcctctattacttggtacgtatcatcgccaa |
36549019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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