View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_65 (Length: 236)
Name: NF16003_low_65
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 11070679 - 11070472
Alignment:
| Q |
13 |
aaaataaactattcctaacccgaagaaaaaatgactagaatatcgtttttaacttttaaagctgatattggataataattattattagtacatgtcgaaa |
112 |
Q |
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| T |
11070679 |
aaaataaactattcctaacccgaagaaaaaatgactagcatatcgttttgaacttttaaagctgatattggataataattattattattacatgtcgaaa |
11070580 |
T |
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| Q |
113 |
gaatttcattatttataaagaatttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggagatacgtaacacaa |
212 |
Q |
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| T |
11070579 |
gaatttcattatttataaagaatttaaaacaatcttcataattcaaataaacttcactaaaagattagttcaagtacaccaatggagatacgtaacacag |
11070480 |
T |
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| Q |
213 |
tctgttgg |
220 |
Q |
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|||||||| |
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| T |
11070479 |
tctgttgg |
11070472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 11042017 - 11042117
Alignment:
| Q |
101 |
tacatgtcgaaagaatttcattatttataaagaatttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggaga |
200 |
Q |
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|||||||| ||| || ||||||||||| ||| ||||||||||| ||| |||||||||||||||| ||||||||||||| | || |||||||||||||| |
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| T |
11042017 |
tacatgtccaaacaacttcattattta--aaggatttaaaacaaacttcataattcaaataaactagactaaaagattagatgaattacaccaatggaga |
11042114 |
T |
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| Q |
201 |
tac |
203 |
Q |
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||| |
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| T |
11042115 |
tac |
11042117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 11040119 - 11040185
Alignment:
| Q |
136 |
ttaaaacaatcttgataattcaaataaacttaactaaaagattagttcaagtacaccaatggagata |
202 |
Q |
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| T |
11040119 |
ttaaaacaaacttcagaattcaagtaaacttgattaaaagattagttcaagtacaccaaaggagata |
11040185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 11060431 - 11060380
Alignment:
| Q |
152 |
aattcaaataaacttaactaaaagattagttcaagtacaccaatggagatac |
203 |
Q |
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||||||||||||||| | |||| |||||||||||||||||||| |||||||| |
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| T |
11060431 |
aattcaaataaacttgattaaatgattagttcaagtacaccaaaggagatac |
11060380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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