View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16003_low_7 (Length: 550)
Name: NF16003_low_7
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Complemental strand, 32034273 - 32033752
Alignment:
| Q |
18 |
gtatcaaataagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgctagagaggcatagattaatgctggaaaattc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32034273 |
gtatcaaataattaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgctagagaggcatagattaatgctggaaaattc |
32034174 |
T |
|
| Q |
118 |
aaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtttagtatttatctctacactt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
32034173 |
aaccttaggatcttttaggtaatcaacaatttcttcaagttcagcttttgcctcgtctacacctttcacatcgctaagtttagtatttgtctcaacactt |
32034074 |
T |
|
| Q |
218 |
ggctgcacttcttcgtacataaatgtgatat--nnnnnnnnncagagaatgagcgaatcaaaatccgattgactattgaattaagctcagtggtttgagt |
315 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32034073 |
ggctgcatttcttcgtacataaatgtgatataaaaaaaaaaacagagaatgagcgaatcaaaatccgattgactattgaattaagctcagtggtttgagt |
32033974 |
T |
|
| Q |
316 |
tacaatgacacagtaataccttttctgattcctttatacacgatgtgagctactgcacaagaaatcaagaggaaggccgctgcaataaaccaaattgtat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32033973 |
tacaatgacacagtaataccttttctgattcctttatacacgatgtg----cctacacaagaaatcaagaggaaggccgctgcaataaaccaaattgtat |
32033878 |
T |
|
| Q |
416 |
gccattgctgctctttgaaatttccaccttctaatgcagcaaccatatcagtaggagcacttgcagttccaagaatcccacttgtaggttctccgacgtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32033877 |
gccattgctgctctttgaaatttccaccttctaatgcagcaaccatatcagtaggagcacttgcagttccaagaatcccacttgtaggttctccgacgtt |
32033778 |
T |
|
| Q |
516 |
tgtaagagcagcaactccacctatgc |
541 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32033777 |
tgtaagagcagcaactccacctatgc |
32033752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 258 - 539
Target Start/End: Complemental strand, 31791607 - 31791312
Alignment:
| Q |
258 |
cagagaatgagcgaatcaaaatccgattgactattgaattaagctcagtggtttgagttacaatgacacagtaataccttttctgattcctttatacacg |
357 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
31791607 |
cagagaatgagcgaatcaaattcagattgactattgaattaagctcagttgtttgagttacaatgacacagtaacaccttttctaattcctttatacacg |
31791508 |
T |
|
| Q |
358 |
atgtgagctactgcacaagaaatcaagaggaaggccgctgcaataaaccaaattgtatgccat--tgctg----ctctttgaaatttccaccttctaatg |
451 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
31791507 |
atatgagctactacacaacaaatcaagaggaaggccgctgcaataaacgaaattgtatgccatattgctgtgctctctttgaaatttccaccttctaatg |
31791408 |
T |
|
| Q |
452 |
cagcaaccatatcagtaggagcacttgcagttccaagaatccca---cttgt-----aggttctccgacgtttgtaagagcagcaactccacctat |
539 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| ||| | || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
31791407 |
cagcgaccatatcagtaagagcacttgcagttccaagaatcccatcccttctaatacagcttttccgacgtttgtaagagcagcaactccacctat |
31791312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 31791861 - 31791632
Alignment:
| Q |
18 |
gtatcaaataagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgctagagaggcatagattaatgctggaaaattc |
117 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31791861 |
gtatcatataagtaagcaacgagattggaatagcttaggacaaatgtaaatcaaataactattccatgctagagaa-catgaattaatgctggaaaattc |
31791763 |
T |
|
| Q |
118 |
aaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtttagtatttatctctacactt |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
31791762 |
tacctcgggatcttttaggtaatcaacaatttcttcaagttcagcctttggcatgtctacacctttcacgtcgctaagtttagtattagtctctacactt |
31791663 |
T |
|
| Q |
218 |
ggctgcacttcttcgtacataaatgtgatat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31791662 |
ggctgcacttcttcgtacataaatgtgatat |
31791632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 32023832 - 32023590
Alignment:
| Q |
18 |
gtatcaaataagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgctagagag--------------------gcat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
32023832 |
gtatcaaataagtaatcaacgagattggaatagcttaggacacatgtaaatcaaataactatttcatgctagagtgcgagaaatgcttgcaagagagcat |
32023733 |
T |
|
| Q |
98 |
agattaatgctggaaaattcaaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtt |
197 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
32023732 |
ggattaatgctggaaaagtctaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgcctcgcctacacctttcatatcgctaagtt |
32023633 |
T |
|
| Q |
198 |
tagtatttatctctacacttggctgcacttcttcgtacataaa |
240 |
Q |
| |
|
||||| || |||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
32023632 |
tagtacttgtctctagactgggctgcacttctttgtacataaa |
32023590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 32012283 - 32012044
Alignment:
| Q |
20 |
atcaaataagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgctag---------------------agag-gcat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
32012283 |
atcaaataagtaatcaacgagattggaatagcttaggacacatgtaaatcaaataactatttcatgctagagtgcgagaactgcaagaaagagagagcat |
32012184 |
T |
|
| Q |
98 |
agattaatgctggaaaattcaaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtt |
197 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || |
|
|
| T |
32012183 |
ggattaatgctggaaaagtctaccttaggatcttttaggtaatcaacaatttcttcaagttcagccttcgcctcatctacacctttcacatcgctaaatt |
32012084 |
T |
|
| Q |
198 |
tagtatttatctctacacttggctgcacttcttcgtacat |
237 |
Q |
| |
|
|||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
32012083 |
tagtatttgtctctacactgggctgcagttcttcgtacat |
32012044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 271 - 546
Target Start/End: Complemental strand, 32011992 - 32011709
Alignment:
| Q |
271 |
aatcaaaatccgattgactattgaattaagctcagtggtttg--agttacaatgacacagtaata---ccttttctgattcctttatacacgatgtgagc |
365 |
Q |
| |
|
||||||| || |||||| ||||||||||| ||||| | |||| ||||||||||| ||||||||| ||| | | ||||||||||||||||||||||| |
|
|
| T |
32011992 |
aatcaaactcagattgaatattgaattaaactcagcgatttgtaagttacaatgagacagtaataatacctgtgttaattcctttatacacgatgtgagc |
32011893 |
T |
|
| Q |
366 |
tactgcacaagaaatcaagaggaaggccgctgcaataaaccaaattgtatgccattgctgctctttgaaatttccaccttctaatgcagcaaccatatca |
465 |
Q |
| |
|
| || ||| | | ||||||||||||||| |||||| ||||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
32011892 |
tcctacaccacatatcaagaggaaggcccctgcaacaaaccaaattgtatgccatagttgctcattgaaattttcaccttctaatgcagcaaccttatca |
32011793 |
T |
|
| Q |
466 |
gtaggagcacttgcagttccaagaatccca---cttgtaggttctccgacgtttgtaagagcagcaactccacctatgctactc |
546 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||||||||| ||| ||||||| ||||| |||||||| |||||| |
|
|
| T |
32011792 |
acaggagcacttgtagttccaagaatcccatcttttgttggttctccgacatttataagagctgcaacaccacctatactactc |
32011709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 386 - 529
Target Start/End: Complemental strand, 32023508 - 32023363
Alignment:
| Q |
386 |
ggaaggccgctgcaataaaccaaattgtatgccattgctgctctttgaaatttccaccttctaatgcagcaaccatatcagtaggagcacttgcagttcc |
485 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |
|
|
| T |
32023508 |
ggaaggccactgcaataaaccaaattgtatgccata-ctgctctttgaaatttccaccttctaatgcagcgaccatatcagtaggagcacttgtagtttc |
32023410 |
T |
|
| Q |
486 |
aagaatccca---cttgtaggttctccgacgtttgtaagagcagcaa |
529 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
32023409 |
aagaatcccatctcttgtaggttctccgacatttgtaagagccgcaa |
32023363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 290 - 491
Target Start/End: Original strand, 48114006 - 48114209
Alignment:
| Q |
290 |
attgaattaagctcagtggtttg--agttacaatgacacagtaataccttttctgattcctttatacacgatgtgagctactgcacaagaaatcaagagg |
387 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||| ||||| |||||||||| || |||||||||| | | ||| ||||| || ||| ||||||| |||| |
|
|
| T |
48114006 |
attgaattaagctaagtcgtttgcaagttacaataacacaataatacctttactaattcctttatcctcaatgagagctcctacacccgaaatcacgagg |
48114105 |
T |
|
| Q |
388 |
aaggccgctgcaataaaccaaattgtatgccattgctgctctttgaaatttccaccttctaatgcagcaaccatatcagtaggagcacttgcagttccaa |
487 |
Q |
| |
|
|||||| |||||| | ||| ||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
48114106 |
aaggccactgcaacagacctaattgtacgccatatttgctctttgaaacttccaccttctgatgcagcaaccatatgaataggagcaccagcagttccaa |
48114205 |
T |
|
| Q |
488 |
gaat |
491 |
Q |
| |
|
|||| |
|
|
| T |
48114206 |
gaat |
48114209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 48113797 - 48113909
Alignment:
| Q |
119 |
accttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtttagtatttatctctacacttg |
218 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||| | |||||||||| | |
|
|
| T |
48113797 |
accttaggatctcttaggtaatgaacaatttcttcaagttccgcctttgcctcatctacacctttcacatcactaaatttagtactggtctctacactgg |
48113896 |
T |
|
| Q |
219 |
gctgcacttcttc |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
48113897 |
gctgcacttcttc |
48113909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 48133917 - 48134008
Alignment:
| Q |
119 |
accttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtttagtatttatctc |
210 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
48133917 |
accttaggatctcttaggtaatgaacaatttcttcaagatcagcttttgcctcatccacacctttcacatcgctaagtttagtatttgtctc |
48134008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 48140827 - 48140723
Alignment:
| Q |
95 |
catagattaatgctggaaaattcaaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaa |
194 |
Q |
| |
|
|||||||| |||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
48140827 |
catagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgcctcatccacacctttcacatcgctaa |
48140728 |
T |
|
| Q |
195 |
gttta |
199 |
Q |
| |
|
|||| |
|
|
| T |
48140727 |
attta |
48140723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 48140917 - 48140857
Alignment:
| Q |
27 |
aagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgct |
87 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||| |||||||||| ||||||||||| |
|
|
| T |
48140917 |
aagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataaatatttcatgct |
48140857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 48134160 - 48134289
Alignment:
| Q |
313 |
agttacaatgacacagtaataccttttctgattcctttatacacgatgtgagctactgcacaagaaatcaagaggaaggccgctgcaataaaccaaattg |
412 |
Q |
| |
|
|||||| ||||||||| ||||||||| || |||||||||| | | || ||||| | ||| ||||||||||| ||| || |||||| | || ||||| |
|
|
| T |
48134160 |
agttacgatgacacagcaatacctttactaattcctttatcctcaataagagctccgacaccagaaatcaagatgaatcccactgcaagagtcctaattg |
48134259 |
T |
|
| Q |
413 |
tatgccattgctgctctttgaaatttccac |
442 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
|
|
| T |
48134260 |
ttcgccatagctgctctttgaaatttccac |
48134289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 25244364 - 25244455
Alignment:
| Q |
119 |
accttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaagtttagtatttatctc |
210 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||| |||| |
|
|
| T |
25244364 |
accttaggatctcttaggtaatgaacaatttcttcaagatcagcttttgcctcatccacacctttcacatcgctaagtttagtatttgtctc |
25244455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 25253466 - 25253362
Alignment:
| Q |
95 |
catagattaatgctggaaaattcaaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgccttgtctacacctttcacatcgctaa |
194 |
Q |
| |
|
|||||||| |||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||| |||||||||| || ||||||||||||||||||| |
|
|
| T |
25253466 |
catagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgcctcatccacacctttcacatcgctaa |
25253367 |
T |
|
| Q |
195 |
gttta |
199 |
Q |
| |
|
|||| |
|
|
| T |
25253366 |
attta |
25253362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 25253556 - 25253496
Alignment:
| Q |
27 |
aagtaatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgct |
87 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||| |||||||||| ||||||||||| |
|
|
| T |
25253556 |
aagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataaatatttcatgct |
25253496 |
T |
|
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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 25244556 - 25244685
Alignment:
| Q |
313 |
agttacaatgacacagtaataccttttctgattcctttatacacgatgtgagctactgcacaagaaatcaagaggaaggccgctgcaataaaccaaattg |
412 |
Q |
| |
|
|||||| |||||||| ||||||||| || |||||||||| | | || ||||| | ||| ||||||||||| ||| || |||||| | || ||||| |
|
|
| T |
25244556 |
agttacgatgacacaacaatacctttactaattcctttatcctcaataagagctccgacaccagaaatcaagatgaatcccactgcaagagtcctaattg |
25244655 |
T |
|
| Q |
413 |
tatgccattgctgctctttgaaatttccac |
442 |
Q |
| |
|
| |||||| ||||||||||||||||||||| |
|
|
| T |
25244656 |
tttgccatagctgctctttgaaatttccac |
25244685 |
T |
|
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