View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16003_low_8 (Length: 545)
Name: NF16003_low_8
Description: NF16003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16003_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 36374796 - 36374276
Alignment:
| Q |
1 |
tttctttggatattggttcaccaagaagatcaatagcatcagttgtgaacgtatcattattatcatcttcatcagcttgttccgtatcttcactgcattg |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| |
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| T |
36374796 |
tttctttggatattggttcaccaaga---tcagtagcatcagttgagaacgtatcattattaacatcttcatcaacttgttccgtatcttcactgcgttg |
36374700 |
T |
|
| Q |
101 |
tttcttctgttcgtaccattttagcctttccacctaccattagatataatttagacaaccaatagagaaa----atatgtaacaaacaaaatgagaacat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||| | | ||| ||||||||||||||||| || |
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| T |
36374699 |
tttcttctgttcgtaccattttagcctttccacctaccattggatataaattagacaatcaaaagagacagacaacatgcaacaaacaaaatgagaatat |
36374600 |
T |
|
| Q |
197 |
agttaacattaatagaaaacatatccaaccaaataaggaactaaatttacatgcataattacaagtttgaaagcatggtcgatctggtaaaatcacagtt |
296 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||| | |
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| T |
36374599 |
agttaacatcaatagaaaacatatccaaccaaataaggaactaaatttacatgtataattaaaagtttgaaatcatggtggatctggtaaaatcacagct |
36374500 |
T |
|
| Q |
297 |
gcatagtgattttcttgaagtttcaaagtgtaatttttgaaaaatcgcagtggtgcactgtgattttatcaaattcattccgagatcaaacatgcatagg |
396 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
36374499 |
gcatagtgattttcttgaagtttcaaagtgtaacttttggaaaatcgcagtgacacactgtgattttatcaaattcattgcgagttcaaacatgcataga |
36374400 |
T |
|
| Q |
397 |
ttattgttaagtttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttca |
496 |
Q |
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| T |
36374399 |
ttattcataagtttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttca |
36374300 |
T |
|
| Q |
497 |
tccaatcgataatcatgttcacat |
520 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
36374299 |
tccaatcgataatcatgtttacat |
36374276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 287 - 544
Target Start/End: Original strand, 12069633 - 12069881
Alignment:
| Q |
287 |
aatcacagttgcatagtgattttcttgaagtttcaaagtgtaatttttgaaaaatcgcagtggtgcactgtgattttatcaaattcattccgagatcaaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||| |||||||||| |||||||| ||| | | || ||||| |
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| T |
12069633 |
aatcacagttgcatagtgattttcttgaagtttcaatgtgtaacttttggaaaatcgcactggcgcactgtgatcttatcaaactcaatgccagttcaaa |
12069732 |
T |
|
| Q |
387 |
catgcataggttattgttaagtttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattcc |
486 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
12069733 |
catgcatga---------aagtttttacttgacttacaatgggttcataaatgtatcgtatctcagttttcacaaagtcgcatgtatggcagtatattcc |
12069823 |
T |
|
| Q |
487 |
aatttgttcatccaatcgataatcatgttcacatatttcgttggattccttctctgtg |
544 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||| |||| |||| |||| |
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|
| T |
12069824 |
aatttgttcatccaatcgataatcatgttctcatatttccttgaattctttctttgtg |
12069881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 408 - 519
Target Start/End: Original strand, 32251159 - 32251270
Alignment:
| Q |
408 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgata |
507 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||| ||||||||||||| || ||| | | |||||||||||||||| ||||||||||| ||| |
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| T |
32251159 |
tttttacttgacttacaaatggctcagaaatgtcccgtattgcagttttcacaaatccacatcgaagacagtatattccaatttcttcatccaatctata |
32251258 |
T |
|
| Q |
508 |
atcatgttcaca |
519 |
Q |
| |
|
|||||||||||| |
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|
| T |
32251259 |
atcatgttcaca |
32251270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 408 - 539
Target Start/End: Complemental strand, 38208308 - 38208178
Alignment:
| Q |
408 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgata |
507 |
Q |
| |
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||||||||| |||||||| |||||||||||||| || || ||| |||||||||||||||||| || || |||||||||||||| |||||| ||| ||| |
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| T |
38208308 |
tttttacttaacttacaaagggttcagaaatgtctcctacctcggttttcacaaagccgcatctaagg-tgtatattccaatttcttcatctaatttata |
38208210 |
T |
|
| Q |
508 |
atcatgttcacatatttcgttggattccttct |
539 |
Q |
| |
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| ||| ||||| |||| ||| ||||||||| |
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| T |
38208209 |
gttatgctcacaaatttacttgaattccttct |
38208178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 450
Target Start/End: Original strand, 32228619 - 32228654
Alignment:
| Q |
415 |
ttgacttacaatgggttcagaaatgtatcgtatctc |
450 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
32228619 |
ttgacttacaatgggttcagaaatgtctcgtatctc |
32228654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 497
Target Start/End: Original strand, 8845552 - 8845641
Alignment:
| Q |
408 |
tttttacttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgcatgtacggcagtatattccaatttgttcat |
497 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||| || | ||| ||||||| |||| ||||| |
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| T |
8845552 |
tttttacttgacttacaactggttcagaaatgtctcgtatctcggttttcacagagccgcagctaagacagaatattccgatttcttcat |
8845641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 8809654 - 8809724
Alignment:
| Q |
400 |
ttgttaagttttt--acttgacttacaatgggttcagaaatgtatcgtatctcagttttcacaaagccgca |
468 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||||||| |||||| | |||||| ||||||| |
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| T |
8809654 |
ttgttaagttttttcacttgacttacaatgtgttcataaatgtatcatatctcgttattcacagagccgca |
8809724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 519
Target Start/End: Original strand, 35960810 - 35960873
Alignment:
| Q |
456 |
tcacaaagccgcatgtacggcagtatattccaatttgttcatccaatcgataatcatgttcaca |
519 |
Q |
| |
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|||||||||| ||| ||| ||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
35960810 |
tcacaaagccacatatacagcagtatattccaatttcttcatccaatctattatcatgttcaca |
35960873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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