View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16004_high_16 (Length: 238)

Name: NF16004_high_16
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16004_high_16
NF16004_high_16
[»] chr7 (4 HSPs)
chr7 (35-228)||(26281437-26281629)
chr7 (122-188)||(24806093-24806160)
chr7 (25-75)||(24806184-24806234)
chr7 (152-200)||(40254315-40254363)
[»] chr8 (7 HSPs)
chr8 (34-212)||(28326333-28326511)
chr8 (122-188)||(19476693-19476760)
chr8 (122-188)||(19547618-19547685)
chr8 (122-188)||(19585005-19585072)
chr8 (25-75)||(19476619-19476669)
chr8 (25-75)||(19547544-19547594)
chr8 (25-75)||(19585096-19585146)
[»] chr6 (3 HSPs)
chr6 (122-188)||(1709394-1709461)
chr6 (122-188)||(17791983-17792050)
chr6 (25-75)||(1709485-1709535)
[»] chr5 (4 HSPs)
chr5 (122-188)||(15275291-15275358)
chr5 (122-205)||(11893071-11893155)
chr5 (25-75)||(15275217-15275267)
chr5 (28-75)||(11893000-11893047)
[»] chr3 (4 HSPs)
chr3 (122-188)||(12413179-12413246)
chr3 (122-188)||(18150903-18150970)
chr3 (25-75)||(12413105-12413155)
chr3 (25-75)||(18150829-18150879)
[»] chr2 (2 HSPs)
chr2 (122-188)||(24222447-24222514)
chr2 (25-75)||(24222373-24222423)
[»] chr4 (2 HSPs)
chr4 (122-188)||(1774076-1774143)
chr4 (25-75)||(1774002-1774052)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 26281437 - 26281629
Alignment:
Q  35 atggttctaccctctcaagaacaatcatatccttttcttcatgcaaactctttcttcatatcatgtcccaacaagacaaggtcatcttcatcttcctctt 134  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26281437 atggttctaccctttcaaaaacaatcatatccttt-cttcatgcagactctttcttcttatcatgtcccaacaagacaaggtcatcttcatcttcctctt 26281535  T
Q  135 ctccatcaataaaccttaaaatagaccaaaagcaattaacagttagagaaatggctattaatgatataactggaaataccacttattacctatg 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26281536 ctccatcaataaaccttaaaatagaccaaaagcaattaacagttagagaaatagctattaatgatataactggaaataccacttattacctatg 26281629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 24806160 - 24806093
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  24806160 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 24806093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 24806234 - 24806184
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  24806234 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 24806184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 40254315 - 40254363
Alignment:
Q  152 aaaatagaccaaaagcaattaacagttagagaaatggctattaatgata 200  Q
    |||||||||||||| ||||||||| |||||||| ||| |||||||||||    
T  40254315 aaaatagaccaaaatcaattaacaattagagaagtggatattaatgata 40254363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 28326333 - 28326511
Alignment:
Q  34 tatggttctaccctctcaagaacaatcatatccttttcttcatgcaaactctttcttcatatcatgtcccaacaagacaaggtcatcttcatcttcctct 133  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||| | |||||||||| |||||  || ||||||||||||||||||    
T  28326333 tatggttctaccctatcaagaacaatcctatcattttcttcatgcatactctttcttcctttcatgtcccaccaagatcagatcatcttcatcttcctct 28326432  T
Q  134 tctccatcaataaaccttaaaatagaccaaaagcaattaacagttagagaaatggctattaatgatataactggaaata 212  Q
    ||||||||||| ||||||  ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  28326433 tctccatcaatgaacctttgaatagaccaaaagtaattaatagttagagaaatggctattaatgatataactggaaata 28326511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 19476693 - 19476760
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  19476693 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 19476760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 19547618 - 19547685
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  19547618 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 19547685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 19585072 - 19585005
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| |||||||||  |||||||||||||||| ||||    
T  19585072 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatgg 19585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 19476619 - 19476669
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  19476619 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 19476669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 19547544 - 19547594
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  19547544 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 19547594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 19585146 - 19585096
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  19585146 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 19585096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 1709461 - 1709394
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  1709461 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 1709394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 17791983 - 17792050
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| |||||||||  |||||||||||||||| ||||    
T  17791983 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatgg 17792050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 1709535 - 1709485
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  1709535 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 1709485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 15275291 - 15275358
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  15275291 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 15275358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 11893071 - 11893155
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaata-gaccaaaagcaattaacagttagagaaatggctattaatgatataact 205  Q
    |||||||||||||||||||||||  | ||||||||| ||| |||| ||||||||||||| ||| |||| || |||||||||||||    
T  11893071 tcatcttcctcttctccatcaatgcatcttaaaataagacaaaaaacaattaacagttaaagagatggataataatgatataact 11893155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 15275217 - 15275267
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  15275217 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 15275267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 11893000 - 11893047
Alignment:
Q  28 tttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    ||||| |||||||||||||| | ||||||||||| |||||||||||||    
T  11893000 tttttatatggttctaccctatgaagaacaatcacatccttttcttca 11893047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 12413179 - 12413246
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  12413179 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 12413246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 18150903 - 18150970
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  18150903 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 18150970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 12413105 - 12413155
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  12413105 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 12413155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 18150829 - 18150879
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  18150829 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 18150879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 24222447 - 24222514
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||| ||||    
T  24222447 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg 24222514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 24222373 - 24222423
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  24222373 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 24222423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 1774076 - 1774143
Alignment:
Q  122 tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagagaaatgg 188  Q
    |||||||||||||||||||||||  |||||||||| |||||||||  |||||||||||||||| ||||    
T  1774076 tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatgg 1774143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 1774002 - 1774052
Alignment:
Q  25 cagtttttctatggttctaccctctcaagaacaatcatatccttttcttca 75  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||||||    
T  1774002 cagtttttatatggttctaccctatcaagaacaatcatatacttttcttca 1774052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University