View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16004_high_3 (Length: 508)
Name: NF16004_high_3
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 49811398 - 49810904
Alignment:
| Q |
1 |
ttcatcatcttgttctataaatatactttgtcttttaaaaacaactgacatactatgnnnnnnnnnnnnnnnnn-gtgagggggacaacaatactaacat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
49811398 |
ttcatcatcttgttctataaatatactttgtcttttaaaaacaactgccatactatgttttttttatttttttttgtgagggggacaacaatactaacat |
49811299 |
T |
|
| Q |
100 |
gtgagttgtgtcaatgtacagcaccggtcgtcctagaggcagcatttctaacaggtgtggtggttgctagcttaacagtctacacattttgggctgttaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49811298 |
gtgagttgtgtcaatgtacagcaccggtcgtcctagaggcagcatttctaacgggtgtggtggttgctagcttaacattctacacattttgggctgttaa |
49811199 |
T |
|
| Q |
200 |
aagaggcaaagattttagtttccttggtccattcctctttgcttctcttttggtgttgatgatgtttgcacttattcaggtaaatattaattaatttcat |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49811198 |
aagaggcaaagattttagtttccttgctccattcctctttgcttctcttttggtgttgatgatgtttgcacttattcaggtaaatattaattaatttcat |
49811099 |
T |
|
| Q |
300 |
acaattannnnnnnnatttactggtctaatatctaaatgtgattgtttaatattgaacaggtattaatccctcttggaccaatagggaagacagtatatg |
399 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49811098 |
acaatgtttatttttatttactggtctaatatctaaatgtgattgtataatattgaacagatattaatccctcttggaccaatagggaagacagtatatg |
49810999 |
T |
|
| Q |
400 |
ctggcttgggtgcattattaatgtgtggcttcatcgtatatgatacttgtgacctcattaaaagatacagctatgacgaatacatttgggctgcc |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49810998 |
ctggcttgggtgcattattaatgtgtggcttcatcgtatatgatacttgtgacctcattaaaagatacagctatgacgaatacatttgggctgcc |
49810904 |
T |
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