View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16004_low_1 (Length: 559)

Name: NF16004_low_1
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16004_low_1
NF16004_low_1
[»] chr6 (16 HSPs)
chr6 (248-541)||(3313505-3313798)
chr6 (365-541)||(3320329-3320505)
chr6 (86-249)||(2543734-2543896)
chr6 (167-248)||(11448143-11448224)
chr6 (1-79)||(3313440-3313514)
chr6 (378-430)||(3317064-3317116)
chr6 (210-248)||(16193850-16193888)
chr6 (87-134)||(16193834-16193881)
chr6 (80-130)||(11448056-11448106)
chr6 (98-132)||(28581749-28581783)
chr6 (211-248)||(28581731-28581768)
chr6 (98-134)||(369524-369560)
chr6 (212-248)||(369542-369578)
chr6 (204-248)||(5150619-5150663)
chr6 (211-241)||(2543865-2543895)
chr6 (80-134)||(31654304-31654358)
[»] chr7 (13 HSPs)
chr7 (81-246)||(17272699-17272864)
chr7 (167-248)||(43500068-43500148)
chr7 (158-248)||(29681841-29681940)
chr7 (81-138)||(7211860-7211917)
chr7 (83-134)||(32315709-32315760)
chr7 (80-138)||(29681764-29681822)
chr7 (78-134)||(25099354-25099410)
chr7 (98-140)||(7211997-7212039)
chr7 (81-134)||(46282868-46282921)
chr7 (211-241)||(7211866-7211896)
chr7 (211-241)||(17272705-17272735)
chr7 (204-249)||(48000683-48000728)
chr7 (185-244)||(45231934-45231994)
[»] chr3 (24 HSPs)
chr3 (79-250)||(11512385-11512556)
chr3 (80-249)||(22893890-22894058)
chr3 (98-214)||(31342024-31342140)
chr3 (81-134)||(29081704-29081757)
chr3 (158-214)||(20286981-20287037)
chr3 (185-239)||(29081598-29081653)
chr3 (204-241)||(49159502-49159539)
chr3 (204-248)||(25790897-25790941)
chr3 (191-241)||(48342214-48342264)
chr3 (190-241)||(20286901-20286953)
chr3 (210-250)||(36738382-36738422)
chr3 (213-248)||(31342130-31342165)
chr3 (210-249)||(48342785-48342824)
chr3 (211-241)||(11512393-11512423)
chr3 (80-134)||(33689261-33689315)
chr3 (109-138)||(20286932-20286961)
chr3 (80-133)||(20496482-20496535)
chr3 (212-241)||(22894022-22894051)
chr3 (210-247)||(32385358-32385395)
chr3 (80-117)||(49159509-49159546)
chr3 (212-244)||(5633181-5633213)
chr3 (213-249)||(20287027-20287063)
chr3 (78-134)||(28695423-28695479)
chr3 (80-116)||(48342207-48342243)
[»] chr1 (29 HSPs)
chr1 (80-249)||(28739303-28739472)
chr1 (80-248)||(50754723-50754891)
chr1 (157-248)||(9379894-9379985)
chr1 (172-249)||(28045410-28045487)
chr1 (157-249)||(9884917-9885009)
chr1 (186-249)||(44381907-44381971)
chr1 (105-248)||(6539546-6539693)
chr1 (185-248)||(35251165-35251230)
chr1 (212-249)||(10449446-10449483)
chr1 (157-248)||(15928073-15928156)
chr1 (185-244)||(49200062-49200122)
chr1 (87-134)||(10449454-10449501)
chr1 (79-134)||(28045317-28045371)
chr1 (95-134)||(44801766-44801805)
chr1 (192-248)||(47557372-47557429)
chr1 (98-134)||(28810065-28810101)
chr1 (77-138)||(9379805-9379875)
chr1 (211-241)||(28739435-28739465)
chr1 (219-249)||(34026751-34026781)
chr1 (105-134)||(4579192-4579221)
chr1 (204-241)||(6539683-6539720)
chr1 (204-241)||(9884838-9884875)
chr1 (105-138)||(9884865-9884898)
chr1 (109-138)||(15928175-15928204)
chr1 (81-134)||(28928779-28928832)
chr1 (185-241)||(44938898-44938955)
chr1 (190-241)||(9379815-9379867)
chr1 (204-244)||(37155040-37155080)
chr1 (212-248)||(44938794-44938830)
[»] chr2 (19 HSPs)
chr2 (167-248)||(12918619-12918700)
chr2 (157-248)||(39819139-39819230)
chr2 (79-248)||(15562202-15562371)
chr2 (80-214)||(7755335-7755469)
chr2 (190-241)||(39819060-39819112)
chr2 (181-241)||(5913522-5913582)
chr2 (204-248)||(12918498-12918543)
chr2 (161-236)||(13421692-13421767)
chr2 (83-129)||(5095752-5095798)
chr2 (105-138)||(12918557-12918590)
chr2 (87-140)||(13421788-13421841)
chr2 (105-138)||(39819087-39819120)
chr2 (213-249)||(7755459-7755495)
chr2 (190-236)||(12918535-12918582)
chr2 (105-140)||(30610255-30610290)
chr2 (211-241)||(7755342-7755372)
chr2 (105-134)||(5095818-5095847)
chr2 (212-241)||(13421812-13421841)
chr2 (204-244)||(37632985-37633025)
[»] chr5 (22 HSPs)
chr5 (157-248)||(5215560-5215651)
chr5 (157-232)||(19417521-19417595)
chr5 (167-248)||(36568790-36568871)
chr5 (78-221)||(9177863-9178006)
chr5 (161-221)||(29385303-29385363)
chr5 (190-241)||(29385394-29385446)
chr5 (204-241)||(19417442-19417479)
chr5 (190-239)||(1839970-1840020)
chr5 (185-242)||(7137637-7137695)
chr5 (167-239)||(9904168-9904241)
chr5 (98-139)||(25879405-25879446)
chr5 (105-138)||(29385386-29385419)
chr5 (182-241)||(4376444-4376504)
chr5 (98-134)||(12605660-12605696)
chr5 (98-134)||(42772070-42772106)
chr5 (210-249)||(12605676-12605715)
chr5 (89-132)||(23219389-23219432)
chr5 (157-220)||(25879328-25879391)
chr5 (175-248)||(4376340-4376414)
chr5 (109-138)||(1839999-1840028)
chr5 (211-248)||(41288004-41288041)
chr5 (86-134)||(896274-896322)
[»] chr4 (22 HSPs)
chr4 (157-248)||(31846782-31846873)
chr4 (167-248)||(31012213-31012294)
chr4 (167-232)||(6608435-6608500)
chr4 (157-214)||(6607420-6607477)
chr4 (167-247)||(2254618-2254698)
chr4 (175-241)||(46321429-46321496)
chr4 (185-246)||(32008340-32008402)
chr4 (80-133)||(30023482-30023535)
chr4 (190-241)||(31846900-31846952)
chr4 (98-138)||(53261107-53261147)
chr4 (190-241)||(54613030-54613082)
chr4 (79-134)||(30023650-30023704)
chr4 (190-241)||(31012124-31012176)
chr4 (185-236)||(44023041-44023092)
chr4 (98-134)||(54223570-54223606)
chr4 (83-134)||(11392303-11392354)
chr4 (192-246)||(15031965-15032020)
chr4 (106-140)||(31012152-31012186)
chr4 (105-138)||(31846892-31846925)
chr4 (79-138)||(31846892-31846960)
chr4 (98-138)||(38324933-38324973)
chr4 (212-244)||(53261093-53261125)
[»] chr8 (8 HSPs)
chr8 (157-249)||(43465162-43465257)
chr8 (204-248)||(1605038-1605082)
chr8 (190-249)||(16687511-16687571)
chr8 (98-138)||(45051339-45051379)
chr8 (157-248)||(31470820-31470913)
chr8 (210-244)||(33763461-33763495)
chr8 (105-134)||(31470849-31470878)
chr8 (185-240)||(31470743-31470798)
[»] scaffold0343 (1 HSPs)
scaffold0343 (204-248)||(12226-12270)
[»] scaffold1315 (2 HSPs)
scaffold1315 (212-241)||(1819-1848)
scaffold1315 (86-134)||(1818-1866)
[»] scaffold1293 (2 HSPs)
scaffold1293 (212-241)||(223-252)
scaffold1293 (86-134)||(205-253)
[»] scaffold0110 (1 HSPs)
scaffold0110 (210-247)||(26500-26537)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 248 - 541
Target Start/End: Original strand, 3313505 - 3313798
Alignment:
Q  248 ccccttagtgatcaaaatagaaaccataagcagccacgttgactttcctttcttttcccctcaaaggtgaaacttctctttctatatccttctatttata 347  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3313505 ccccttagtgatcaaaatagaaaccataagcagccacattgactttcttttcttttcccctcaaaggtgaaacttctctttctatatccttctatttata 3313604  T
Q  348 aaacccattaaggaccactcataatttcttatataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctcttcttagctttttctggat 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3313605 aaacccattaaggaccactcataatttcttatataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctcttcttagctttttctggat 3313704  T
Q  448 ttgtgaatggctcaatgaataagaaggagaagaatcatgatgatattaaattgtttgagctcaagaaaggtgatcttactttgaaggtcactaa 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3313705 ttgtgaatggctcaatgaataagaaggagaagaatcatgatgatattaaattgtttgagctcaagaaaggtgatcttactttgaaggtcactaa 3313798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 365 - 541
Target Start/End: Original strand, 3320329 - 3320505
Alignment:
Q  365 ctcataatttcttatataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctcttcttagctttttctggatttgtgaatggctcaatg 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3320329 ctcataatttcttatataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctcttcttagctttttctggatttgtgaatggctcaatg 3320428  T
Q  465 aataagaaggagaagaatcatgatgatattaaattgtttgagctcaagaaaggtgatcttactttgaaggtcactaa 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3320429 aataagaaggagaagaatcatgatgatattaaattgtttgagctcaagaaaggtgatcttactttgaaggtcactaa 3320505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 2543896 - 2543734
Alignment:
Q  86 cacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttgcacatt 185  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||| |                ||||| ||| |||||||||||| |||| |    
T  2543896 cacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttttttttctttcacaa-atttttttgttgttttacacact 2543798  T
Q  186 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2543797 tgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 2543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 11448143 - 11448224
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11448143 ttttgttgttttgcacacttataacattgtggttggtaatgtcaccaatatcaccaaccacaatgtcacccaagtattatcc 11448224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 3313440 - 3313514
Alignment:
Q  1 aactaagaacttaattggccccacttgtcactacatatgagtactaaccaaccagtaagagatccacatccccttagtg 79  Q
    ||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||||||||||||    
T  3313440 aactaagaacttaattggccccacttgtcactacatatgaggact----aaccagtaagagatccacatccccttagtg 3313514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 430
Target Start/End: Original strand, 3317064 - 3317116
Alignment:
Q  378 atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt 430  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  3317064 atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt 3317116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 16193850 - 16193888
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16193850 accaatgtcaccaaccacaatgtcacccaagtattatcc 16193888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 16193881 - 16193834
Alignment:
Q  87 acttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||||    
T  16193881 acttgggtgacattgtggttggtgacattggtcaaccacaatgtcaca 16193834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 11448056 - 11448106
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgt 130  Q
    |||||||||||||| || |||||||||||| | ||||||||||||||||||    
T  11448056 gggtagcacttgggtgacattgtggttggtaatattggccaaccacaatgt 11448106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 28581749 - 28581783
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtca 132  Q
    |||||||||||||||||||||||||||||||||||    
T  28581749 attgtggttggtgacattggccaaccacaatgtca 28581783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 28581768 - 28581731
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28581768 ccaatgtcaccaaccacaatgtcagccaagtattatcc 28581731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 369560 - 369524
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||| |||||||||||||||||    
T  369560 attgtggttggtgacattgaccaaccacaatgtcaca 369524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 369542 - 369578
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||||||||||||||||||||||| ||||||||||||    
T  369542 caatgtcaccaaccacaatgtcactcaagtattatcc 369578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 5150663 - 5150619
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||    
T  5150663 aatgtcatcaatgtcaccaagcacaatgtcaccaaagtattatcc 5150619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 2543865 - 2543895
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  2543865 ccaatgtcaccaaccacaatgtcacccaagt 2543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 31654304 - 31654358
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||||||||| ||||| | | | ||||||||||||||| ||||||||||||    
T  31654304 gggtagcacttgggtgatatagagttgggtgacattggccaatcacaatgtcaca 31654358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 81 - 246
Target Start/End: Original strand, 17272699 - 17272864
Alignment:
Q  81 ggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttgc 180  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |                ||||||||| ||||||||||||||    
T  17272699 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgttgttttgc 17272798  T
Q  181 acatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 246  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17272799 acacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 17272864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 43500068 - 43500148
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||    
T  43500068 ttttgttgttttgtac-tttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcgcccaaatattatcc 43500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 29681841 - 29681940
Alignment:
Q  158 acaagattattttgttgttttgcacatttgtaacattgtggttggt---------aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||||||  |||||||||||| |||| |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  29681841 acaagatatttttgttgttttacacacttgtaacattgtggttggtaatgtcaccaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 29681940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 7211860 - 7211917
Alignment:
Q  81 ggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  7211860 ggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtg 7211917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 32315709 - 32315760
Alignment:
Q  83 tagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  32315709 tagcacttgcgtgacattgtggttggtgacattggccaaccacaatgtcaca 32315760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 29681764 - 29681822
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtg 138  Q
    |||||||| || || || |||||||||||||||||||||||||||||| ||||||||||    
T  29681764 gggtagcattttggtgacattgtggttggtgacattggccaaccacaacgtcacatgtg 29681822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 25099410 - 25099354
Alignment:
Q  78 tggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||||||||| | || ||||||||||||||| |||| ||||||||||||||||    
T  25099410 tggggtagcacttgagtgaaattgtggttggtgactttggtcaaccacaatgtcaca 25099354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 7212039 - 7211997
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtgac 140  Q
    |||||||| || |||||||||||||||||||||||||||||||    
T  7212039 attgtggtgggagacattggccaaccacaatgtcacatgtgac 7211997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 46282868 - 46282921
Alignment:
Q  81 ggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||| | || ||||| ||||||||||||||||||||||||| |||||    
T  46282868 ggtagcacttgagtgacattgtagttggtgacattggccaaccacaatatcaca 46282921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 7211896 - 7211866
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  7211896 ccaatgtcaccaaccacaatgtcacccaagt 7211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 17272735 - 17272705
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  17272735 ccaatgtcaccaaccacaatgtcacccaagt 17272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 48000728 - 48000683
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    |||||||||||||||||| | | |||||||||||||||||| ||||    
T  48000728 aatgtcaccaatgtcacccaactcaatgtcacccaagtattttccc 48000683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 45231934 - 45231994
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtatt 244  Q
    ||||||||||||| ||||  |||||||||||||||||| | | | ||||||||||||||||    
T  45231934 ttgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 45231994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 11512385 - 11512556
Alignment:
Q  79 ggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgtttt 178  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |                ||||||||| ||||| ||||||    
T  11512385 ggggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttttgatgtttt 11512484  T
Q  179 gcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcccc 250  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11512485 gcacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccataatgtcacccaagtattatcccc 11512556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 22894058 - 22893890
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttg 179  Q
    |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||                 |||||||| |||||||||||||    
T  22894058 gggtagcacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatt-ttttgttgttttg 22893960  T
Q  180 cacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22893959 tacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 22893890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 31342024 - 31342140
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttgcacatttgtaacattgtg 197  Q
    ||||||||||||||||||||||||||||||||||||||||  |                ||||||||| ||||||||||||||||| |||||||||||||    
T  31342024 attgtggttggtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttttgttgttttgcacacttgtaacattgtg 31342123  T
Q  198 gttggtaatgtcaccaa 214  Q
    |||||||||||||||||    
T  31342124 gttggtaatgtcaccaa 31342140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 29081757 - 29081704
Alignment:
Q  81 ggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  29081757 ggtagcacttgggtgatattgtggttggtgacattggtcaaccacaatgtcaca 29081704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 20286981 - 20287037
Alignment:
Q  158 acaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaa 214  Q
    |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20286981 acaagacttttttgttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 20287037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 29081653 - 29081598
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaa 239  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  29081653 ttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaa 29081598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 49159502 - 49159539
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49159502 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 49159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 25790897 - 25790941
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  25790897 aatgtcaccaatgtcaccaaccataatgtcacccaaatattatcc 25790941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 48342264 - 48342214
Alignment:
Q  191 cattgtggttgg-taatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  48342264 cattgtggttggctaatgtcac-aatgtcaccaaccacaatgtcacccaagt 48342214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 20286953 - 20286901
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||  ||||||| ||||||||||||||| ||||||||||||||    
T  20286953 acattgtggttggccaatgtcatcaatgtcaccaaccataatgtcacccaagt 20286901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 36738382 - 36738422
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatcccc 250  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  36738382 accaatgtcaccaaccacaatgtcacccaaatattttcccc 36738422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 31342130 - 31342165
Alignment:
Q  213 aatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||||||||||||||| ||||||||    
T  31342130 aatgtcaccaaccacaatgtcacccaaatattatcc 31342165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 48342824 - 48342785
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  48342824 accaatgtcgccaaccataatgtcacccaagtattatccc 48342785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 11512423 - 11512393
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  11512423 ccaatgtcaccaaccacaatgtcacccaagt 11512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 33689315 - 33689261
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||||||||| || |||| | | ||||||||||||||| ||||||||||||    
T  33689315 gggtagcacttgggtgacattgagttgggtgacattggccaatcacaatgtcaca 33689261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 20286932 - 20286961
Alignment:
Q  109 tgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||    
T  20286932 tgacattggccaaccacaatgtcacatgtg 20286961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 20496482 - 20496535
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcac 133  Q
    ||||||||||| || || |||||||| |||||||||| |||| |||||||||||    
T  20496482 gggtagcactttggtgacattgtggtcggtgacattgaccaatcacaatgtcac 20496535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 22894022 - 22894051
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||    
T  22894022 caatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 32385395 - 32385358
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatc 247  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  32385395 accaatgtcaccaatcacaatgtcacccaaatattatc 32385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 49159546 - 49159509
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattgg 117  Q
    |||||||||||||| || ||||||||||||||||||||    
T  49159546 gggtagcacttgggtgacattgtggttggtgacattgg 49159509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 5633181 - 5633213
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagtatt 244  Q
    |||| ||||||||||||||||||||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtatt 5633213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 20287027 - 20287063
Alignment:
Q  213 aatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  20287027 aatgtcaccaaccacaatgtcacccaaatattttccc 20287063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 28695479 - 28695423
Alignment:
Q  78 tggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||| || || | |||| ||||||||||||| ||| ||||||||||||    
T  28695479 tggggtagcacttaggtgacagtgtgattggtgacattggacaatcacaatgtcaca 28695423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 48342207 - 48342243
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattg 116  Q
    |||||||||||||| || |||||||||||||||||||    
T  48342207 gggtagcacttgggtgacattgtggttggtgacattg 48342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 28739472 - 28739303
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttg 179  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |                 |||||||| ||||||| |||||    
T  28739472 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggcttttttctttttcttttacaagatttttttgttattttg 28739373  T
Q  180 cacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  28739372 cacacttgtaacattgtggttggtaatgtcaccaatatcaccaaccacaatatcacccaagtattatccc 28739303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 80 - 248
Target Start/End: Original strand, 50754723 - 50754891
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttg 179  Q
    |||||| |||| || || ||||||||||||||||||||||||||||||||||||||||| |                 |||||||| |||||||||||||    
T  50754723 gggtagtactttggtgacattgtggttggtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttttgttgttttg 50754822  T
Q  180 cacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50754823 cacacttgtaacattgtggttgataatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 50754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 9379894 - 9379985
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  9379894 cacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatgttaccaatgtcaccaaccacaatgtcacccaaatattatcc 9379985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 28045410 - 28045487
Alignment:
Q  172 ttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28045410 ttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 28045487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 9884917 - 9885009
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||    
T  9884917 cacaagatttttttgttgttttgcacacttgtaacattgtggttgataatgtcacgaatgtcaccaaccacaatatcacccaagtatcatccc 9885009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 44381971 - 44381907
Alignment:
Q  186 tgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||    
T  44381971 tgtaacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaaatattatccc 44381907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 6539693 - 6539546
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttgcacatttgtaacattgtggttggta 204  Q
    ||||||||||||| ||||||||||||||||||||||                ||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  6539693 ttggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaagacttttttgttgttttgcacacttgtaacattgtggttggta 6539594  T
Q  205 -----atgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
         || |||||||||| ||||||||||||||||  ||||||||||||    
T  6539593 acatcatatcaccaatgttaccaaccacaatgtca-gcaagtattatcc 6539546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 35251230 - 35251165
Alignment:
Q  185 ttgtaacattgtggttggtaatgtcaccaatgtcaccaaccaca--atgtcacccaagtattatcc 248  Q
    ||||||||||||||||||||||||||||||| |||||||||| |  |||||| |||||||||||||    
T  35251230 ttgtaacattgtggttggtaatgtcaccaatatcaccaaccatatcatgtcatccaagtattatcc 35251165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 10449483 - 10449446
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10449483 caatgtcaccaaccacaatgtcacccaagtattatccc 10449446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 15928156 - 15928073
Alignment:
Q  157 cacaagattatt-ttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| || ||||||||||| ||| ||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||    
T  15928156 cacaagatttttgttgttgttttgtacacttgtaacattgtggttgataatgtcaccaat---------cacaatgtcacccaagtattatcc 15928073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 49200062 - 49200122
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtatt 244  Q
    |||| |||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||    
T  49200062 ttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 10449454 - 10449501
Alignment:
Q  87 acttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||| || ||||||||||||||||||| |||||||||||||||||    
T  10449454 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcaca 10449501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 28045317 - 28045371
Alignment:
Q  79 ggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||| || |||||||||||||| |||||||||||| |||||||||    
T  28045317 ggggtagcacttgggtgacattgtggttggtga-attggccaaccataatgtcaca 28045371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 44801766 - 44801805
Alignment:
Q  95 gatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  44801766 gatattgtggttgatgacattggccaaccacaatgtcaca 44801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 47557372 - 47557429
Alignment:
Q  192 attgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    |||||||||| | |||||||||||||||||||||| |||| ||||| |||||||||||    
T  47557372 attgtggttgatcaatgtcaccaatgtcaccaaccgcaatttcacctaagtattatcc 47557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 28810101 - 28810065
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28810101 attgtggttggtgacattggtcaaccacaatgtcaca 28810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 9379805 - 9379875
Alignment:
Q  77 gtggggtagcacttgggggatattgtggttggtgac---------attggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||| ||||| ||||||||||||         ||||||||||||||||||||||||||    
T  9379805 gtggggtagcacttgggtgatatcgtggttggtgacattggtgatattggccaaccacaatgtcacatgtg 9379875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 28739435 - 28739465
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  28739435 ccaatgtcaccaaccacaatgtcacccaagt 28739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 249
Target Start/End: Complemental strand, 34026781 - 34026751
Alignment:
Q  219 accaaccacaatgtcacccaagtattatccc 249  Q
    |||||||||||||||||||||||||||||||    
T  34026781 accaaccacaatgtcacccaagtattatccc 34026751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 4579192 - 4579221
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||||||||||||||    
T  4579192 ttggtgacattggccaaccacaatgtcaca 4579221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 6539683 - 6539720
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  6539683 aatgtcaccaatatcatcaaccacaatgtcacccaagt 6539720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 9884875 - 9884838
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  9884875 aatgtcaccaatgtcaccaaccactatgtcaccaaagt 9884838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 9884865 - 9884898
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  9884865 ttggtgacattggtcaaccacaatgtcacatgtg 9884898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 15928204 - 15928175
Alignment:
Q  109 tgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtg 15928175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 28928779 - 28928832
Alignment:
Q  81 ggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||| || || | | ||||||||||||||||| ||||||||||||    
T  28928779 ggtagcacttgggtgacatagagtttggtgacattggccaatcacaatgtcaca 28928832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 44938898 - 44938955
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||| ||||||||||| | |||||||| |||||||| || |||||||||||||||||    
T  44938898 ttgtaccattgtggttgttcaatgtcactaatgtcactaatcacaatgtcacccaagt 44938955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 9379867 - 9379815
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||  ||| |||||||||||||||||||| || ||||||||||    
T  9379867 acattgtggttggccaatatcaccaatgtcaccaaccacgatatcacccaagt 9379815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 37155080 - 37155040
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtatt 244  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  37155080 aatgtcaccaatgtcaccaaactctatgtcacccaagtatt 37155040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 44938830 - 44938794
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  44938830 caatgtcactaaccacaatgtcacccaagtgttatcc 44938794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 12918619 - 12918700
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12918619 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 12918700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 39819139 - 39819230
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39819139 cacaagatttttttgttgttttgcacacttgtaatattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 39819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 79 - 248
Target Start/End: Original strand, 15562202 - 15562371
Alignment:
Q  79 ggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgtttt 178  Q
    ||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||                |||  |||| ||||||||||||    
T  15562202 ggggtagcatttgggtgacattgtggttgatgacattggccaaccacaatgtcacatgtgactttcttcttttttattcactggatttttttgttgtttt 15562301  T
Q  179 gcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  15562302 gcacacttgtaacattgtgattggtaatgtcaccaatatcaccaaccataatgtcacccaaatattatcc 15562371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 7755335 - 7755469
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttttg 179  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |                 |||||||| |||||||||||||    
T  7755335 gggtagcacttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttttgttgttttg 7755434  T
Q  180 cacatttgtaacattgtggttggtaatgtcaccaa 214  Q
     ||| ||||||||||||| ||||||||||||||||    
T  7755435 tacacttgtaacattgtgattggtaatgtcaccaa 7755469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 39819112 - 39819060
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  39819112 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 5913582 - 5913522
Alignment:
Q  181 acatttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||| |||||||||||  |||||||| |||||||||||||||||||||||||||||    
T  5913582 acatttgtaagattgtggttggccaatgtcac-aatgtcaccaaccacaatgtcacccaagt 5913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 12918543 - 12918498
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcaccc-aagtattatcc 248  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  12918543 aatgtcaccaatgtcaccaaccacaatgtcacccaaagtattatcc 12918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 13421767 - 13421692
Alignment:
Q  161 agattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacc 236  Q
    ||||| ||||||||||||  ||||||| |||||| |  ||| |||||||| |||||||||||||||| ||||||||    
T  13421767 agatttttttgttgttttatacatttgaaacattataattgataatgtcatcaatgtcaccaaccacgatgtcacc 13421692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 5095752 - 5095798
Alignment:
Q  83 tagcacttgggggatattgtggttggtgacattggccaaccacaatg 129  Q
    ||||||||||| ||||||||||||||||||||| | |||||||||||    
T  5095752 tagcacttgggtgatattgtggttggtgacattagacaaccacaatg 5095798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 12918557 - 12918590
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||||||    
T  12918557 ttggtgacattggccaaccacaatgtcacatgtg 12918590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 13421841 - 13421788
Alignment:
Q  87 acttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgac 140  Q
    ||||||| || ||||||||||||||||||| |||||||||| || |||||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttacatgtgac 13421788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 39819087 - 39819120
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||||||    
T  39819087 ttggtgacattggccaaccacaatgtcacatgtg 39819120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 7755459 - 7755495
Alignment:
Q  213 aatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||||||||||||||||||| |||||||||    
T  7755459 aatgtcaccaaccacaatgtcacccaaatattatccc 7755495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 12918582 - 12918535
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacc 236  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||    
T  12918582 acattgtggttggccaatgtcaccaatgtcatcaaccacaatgtcacc 12918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 30610290 - 30610255
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtgac 140  Q
    |||||||||||||||||||| |||||||||||||||    
T  30610290 ttggtgacattggccaaccataatgtcacatgtgac 30610255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 7755372 - 7755342
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||||||||||||||||||||    
T  7755372 ccaatgtcaccaaccacaatgtcacccaagt 7755342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 5095847 - 5095818
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||||||||||||||    
T  5095847 ttggtgacattggccaaccacaatgtcaca 5095818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 13421812 - 13421841
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||    
T  13421812 caatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 37633025 - 37632985
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtatt 244  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtatt 37632985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 5215651 - 5215560
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5215651 cacaagattttgttgttgttttgtacacttgtaacattgtggttggtaatgtcaccaatgttaccaaccacaatgtcacccaagtattatcc 5215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 19417521 - 19417595
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 232  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19417521 cacaagatttttttgttgttttgcacacttg-aacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 19417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 36568790 - 36568871
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||| ||| ||||||||||||||||| | ||||||| |||||||||||||||||||||||  |||||||||||    
T  36568790 ttttgttgttttgtacacttgtaacattgtggttgattatgtcactaatgtcaccaaccacaatgtcacataagtattatcc 36568871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 9178006 - 9177863
Alignment:
Q  78 tggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcacatgtgacnnnnnnnnnnnnnnnncacaagattattttgttgttt 177  Q
    |||||||||||||||  || |||||||||||||| |||||||||||||||| |||||||||||                ||||| ||| |||| ||||||    
T  9178006 tggggtagcacttggatgacattgtggttggtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttttattgttt 9177907  T
Q  178 tgcacatttgtaacattgtggttggtaatgtcaccaatgtcacc 221  Q
    |||||| || ||||||||||||||||| ||||| ||||||||||    
T  9177906 tgcacacttataacattgtggttggtagtgtcatcaatgtcacc 9177863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 29385363 - 29385303
Alignment:
Q  161 agattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcacc 221  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||    
T  29385363 agatttttttgttgttttgcacacttgtaacattgtggttggtaatatcactaatgtcacc 29385303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 29385394 - 29385446
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  29385394 acattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagt 29385446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 19417479 - 19417442
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19417479 aatgtcaccaatgtcaccaaccacaatgtcacccaagt 19417442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 1840020 - 1839970
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaa 239  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||||    
T  1840020 acattgtggttggccaatgtcatcaatgtcaccaaccacaatgtcacccaa 1839970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 7137695 - 7137637
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagta 242  Q
    |||| |||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  7137695 ttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagta 7137637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 9904241 - 9904168
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaa 239  Q
    ||||||| ||||| ||| ||||||||||||||||| | ||| | |||||||||| |||||| ||||||||||||    
T  9904241 ttttgtttttttgtacacttgtaacattgtggttgatcaatattaccaatgtcaacaaccataatgtcacccaa 9904168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 25879446 - 25879405
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtga 139  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  25879446 attgtggttggtgatattagccaaccacaatgtcacatgtga 25879405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 29385419 - 29385386
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||||||    
T  29385419 ttggtgacattggccaaccacaatgtcacatgtg 29385386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 4376444 - 4376504
Alignment:
Q  182 catttgtaacattgtggttggtaat-gtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||| ||||||| |||||| || ||||||||||||| ||||||||||||||| |||||    
T  4376444 catttgtgacattgttgttggtcattgtcaccaatgtcatcaaccacaatgtcactcaagt 4376504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 12605696 - 12605660
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||||||||||||||| ||||||||||||||||    
T  12605696 attgtggttggtgacattggtcaaccacaatgtcaca 12605660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 42772106 - 42772070
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||| |||||||||||||||||    
T  42772106 attgtggttggtgacattgaccaaccacaatgtcaca 42772070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 249
Target Start/End: Original strand, 12605676 - 12605715
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  12605676 accaatgtcaccaaccacaatgtcacttaagtattatccc 12605715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 23219432 - 23219389
Alignment:
Q  89 ttgggggatattgtggttggtgacattggccaaccacaatgtca 132  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
T  23219432 ttgggtgacattgtggttggtgaccttggccaaccacaatgtca 23219389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 25879391 - 25879328
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcac 220  Q
    ||||||| | |||| |||||||  ||| ||||||||||||||||| ||||||||||||| ||||    
T  25879391 cacaagacttttttattgttttatacacttgtaacattgtggttgataatgtcaccaatatcac 25879328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 4376414 - 4376340
Alignment:
Q  175 ttttgcacatttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||| ||| |||| ||||||||||||   |||| ||| ||||| ||||||||||||||||| ||||||||||||    
T  4376414 ttttgtacacttgtgacattgtggttgaccaatggcacgaatgttaccaaccacaatgtcactcaagtattatcc 4376340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 1839999 - 1840028
Alignment:
Q  109 tgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||||||||||||||    
T  1839999 tgacattggccaaccacaatgtcacatgtg 1840028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 41288004 - 41288041
Alignment:
Q  211 ccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  41288004 ccaatatcaccaaccacaatgtcacccaaatattatcc 41288041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 896274 - 896322
Alignment:
Q  86 cacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||| || |||||||||||||| ||||  ||||||||||||||||    
T  896274 cacttgggtgagattgtggttggtgatattgatcaaccacaatgtcaca 896322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 31846873 - 31846782
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31846873 cacaagatttttttgttgttttgcacacttgtaacattttggttggtaatgtcacgaatgtcaccaaccataatgtcacccaagtattatcc 31846782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 31012213 - 31012294
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  31012213 ttttgttgttttgcatacttgtaatattgtggttggtaatgtcactaatgtcaccaaccacaatgtcacctaagtattatcc 31012294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 6608435 - 6608500
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 232  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6608435 ttttgttgttttgcagacttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgt 6608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 6607477 - 6607420
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaa 214  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6607477 cacaagatttttttgttgttttgcacacttgtaacattgtggttggtaatgtcaccaa 6607420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 2254618 - 2254698
Alignment:
Q  167 ttttgttgttttgcacatttgtaacattgtggttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatc 247  Q
    ||||||||||||| ||| ||||||||||||| |||||||| ||| ||||||||| ||||||||||||||  ||||||||||    
T  2254618 ttttgttgttttgtacacttgtaacattgtgattggtaatatcatcaatgtcacgaaccacaatgtcacataagtattatc 2254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 46321429 - 46321496
Alignment:
Q  175 ttttgcacatttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||| ||| |||| |||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  46321429 ttttgtacagttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 32008340 - 32008402
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 246  Q
    |||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||| ||||    
T  32008340 ttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtgttat 32008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 30023482 - 30023535
Alignment:
Q  80 gggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcac 133  Q
    ||||||||||| || ||||||||||||||||||||||| |||||| ||||||||    
T  30023482 gggtagcacttaggtgatattgtggttggtgacattggtcaaccataatgtcac 30023535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 31846900 - 31846952
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  31846900 acattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagt 31846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 53261107 - 53261147
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  53261107 attgtggttggtgacattgaccaaccacaatgtcacatgtg 53261147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 54613082 - 54613030
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  54613082 acattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagt 54613030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Complemental strand, 30023704 - 30023650
Alignment:
Q  79 ggggtagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||    
T  30023704 ggggtagcact-gggtgacattgtggttggtgacattgaccaaccacaatgtcaca 30023650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 31012176 - 31012124
Alignment:
Q  190 acattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 241  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||| |||||    
T  31012176 acattgtggttggtcaatgtcaccattatcaccaaccacaatgtcacacaagt 31012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 44023041 - 44023092
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacc 236  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  44023041 ttgtaacattgtggttggtcaatgtcactaatgtcacc-accacaatgtcacc 44023092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 54223570 - 54223606
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||| |||||||||||||||||    
T  54223570 attgtggttggtgacattgaccaaccacaatgtcaca 54223606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 11392303 - 11392354
Alignment:
Q  83 tagcacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||| || |||||||||| ||| ||||||| ||||||||||||||    
T  11392303 tagcacttgggtgacattgtggttgatgaaattggcctaccacaatgtcaca 11392354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 15032020 - 15031965
Alignment:
Q  192 attgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagtattat 246  Q
    |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||||    
T  15032020 attgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtgttat 15031965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 31012152 - 31012186
Alignment:
Q  106 tggtgacattggccaaccacaatgtcacatgtgac 140  Q
    ||||||||||| |||||||||||||||||||||||    
T  31012152 tggtgacattgaccaaccacaatgtcacatgtgac 31012186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 31846925 - 31846892
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcacatgtg 138  Q
    ||||||| ||||||||||||||||||||||||||    
T  31846925 ttggtgatattggccaaccacaatgtcacatgtg 31846892  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 31846960 - 31846892
Alignment:
Q  79 ggggtagcacttgggggatattgtggttggtgaca---------ttggccaaccacaatgtcacatgtg 138  Q
    ||||||||||||||| || ||||||||||||||||         |||||||||||||||||||||||||    
T  31846960 ggggtagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtg 31846892  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 38324973 - 38324933
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtg 138  Q
    |||||||||||||| |||||||||||| ||| |||||||||    
T  38324973 attgtggttggtgatattggccaaccataatatcacatgtg 38324933  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 53261125 - 53261093
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagtatt 244  Q
    ||||||||||||||||||||||||| |||||||    
T  53261125 caatgtcaccaaccacaatgtcacctaagtatt 53261093  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 43465162 - 43465257
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtgg---ttggtaatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||| ||||||||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  43465162 cacaagatttttttgttgttttgcacacttgtaacattgtggtggttggtaatttcaccaatgtcaccaaccagaatgtcatccaagtattatccc 43465257  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 1605038 - 1605082
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  1605038 aatgtcaccaatgtcaccaactacaatgtcacccaagtattatcc 1605082  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 16687571 - 16687511
Alignment:
Q  190 acattgtggttgg-taatgtcaccaatgtcaccaaccacaatgtcacccaagtattatccc 249  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  16687571 acattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagtattatccc 16687511  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 45051379 - 45051339
Alignment:
Q  98 attgtggttggtgacattggccaaccacaatgtcacatgtg 138  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  45051379 attgtggttggtgacattggccgaccacaatgtcacatgtg 45051339  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 31470820 - 31470913
Alignment:
Q  157 cacaagattattttgttgttttgcacatttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtca-cccaagtattatcc 248  Q
    ||||| ||| |||||||  |||| ||| |||| |||||||||||||  ||||||||||||  ||||||||||||| ||| ||||||||||||||    
T  31470820 cacaatatttttttgtttctttgtacacttgtgacattgtggttggccaatgtcaccaataccaccaaccacaatatcaccccaagtattatcc 31470913  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 33763495 - 33763461
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtatt 244  Q
    |||||||||||||||||||||||||||||| ||||    
T  33763495 accaatgtcaccaaccacaatgtcacccaattatt 33763461  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 31470878 - 31470849
Alignment:
Q  105 ttggtgacattggccaaccacaatgtcaca 134  Q
    ||||||||||||||||||||||||||||||    
T  31470878 ttggtgacattggccaaccacaatgtcaca 31470849  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 31470798 - 31470743
Alignment:
Q  185 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaag 240  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| |||||||||||||    
T  31470798 ttgtgacattgtggttggtcaatgtcac-aatgttaccaaccataatgtcacccaag 31470743  T

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Target: scaffold0343 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 12270 - 12226
Alignment:
Q  204 aatgtcaccaatgtcaccaaccacaatgtcacccaagtattatcc 248  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||    
T  12270 aatgtcatcaatgtcaccaactacaatgtcacccaagtattatcc 12226  T

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Target: scaffold1315 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 1848 - 1819
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||    
T  1848 caatgtcaccaaccacaatgtcacccaagt 1819  T

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Target: scaffold1315; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 1818 - 1866
Alignment:
Q  86 cacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||| || |||||||||||||||||||  |||||||||| |||||    
T  1818 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 1866  T

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Target: scaffold1293 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 223 - 252
Alignment:
Q  212 caatgtcaccaaccacaatgtcacccaagt 241  Q
    ||||||||||||||||||||||||||||||    
T  223 caatgtcaccaaccacaatgtcacccaagt 252  T

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Target: scaffold1293; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 253 - 205
Alignment:
Q  86 cacttgggggatattgtggttggtgacattggccaaccacaatgtcaca 134  Q
    |||||||| || |||||||||||||||||||  |||||||||| |||||    
T  253 cacttgggtgacattgtggttggtgacattgatcaaccacaatatcaca 205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 26537 - 26500
Alignment:
Q  210 accaatgtcaccaaccacaatgtcacccaagtattatc 247  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  26537 accaatgtcaccaaccacaatgtcacataagtattatc 26500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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