View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16004_low_10 (Length: 338)
Name: NF16004_low_10
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 34166830 - 34167152
Alignment:
| Q |
6 |
agagagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34166830 |
agagagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatga |
34166929 |
T |
|
| Q |
106 |
cgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcattta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34166930 |
cgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcattta |
34167029 |
T |
|
| Q |
206 |
agccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34167030 |
agccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatg |
34167129 |
T |
|
| Q |
306 |
ttgcgtcctaggcatgatgatgt |
328 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
34167130 |
ttgcgtcctaggcatgatgatgt |
34167152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University