View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16004_low_12 (Length: 321)
Name: NF16004_low_12
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 303
Target Start/End: Complemental strand, 25950876 - 25950587
Alignment:
| Q |
14 |
cacagacacaagacaaccaaatcaaataaagagaaggcaaacnnnnnnnccttcaaaagggcggatttattccacatcatagcaaattgtccttcgtcga |
113 |
Q |
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| T |
25950876 |
cacaaacacaagacaaccaaatcaaataaagagaaggcaaacaaaaaaaccttcaaaagggcggatttattccacatcatagcaaattgtccttcgtcga |
25950777 |
T |
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| Q |
114 |
tctacaattgtgtataaacgtcagacaaaccaaaaaaccttcaaaggaaccaaacaattctccgagaactcaaaaagacgtctgaacttatctcataagg |
213 |
Q |
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| T |
25950776 |
tctacaattgtgtataaacgtcagacaaaccaaaaaaccttcaaaggaaccaaacaattctccgagaactcaaaaagacgtctgaacttatctcataagg |
25950677 |
T |
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| Q |
214 |
gaccaccttctgaccactagtctaaccaaaagaacgtttttgccccatcactaaacacctacctacccacattgtgtcaactctacttat |
303 |
Q |
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| T |
25950676 |
gaccaccttctgaccactagtctaaccaaaagaacgtttttgccccatcactaaacacctacctacccacattgtttcaactctacttat |
25950587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 25951742 - 25951664
Alignment:
| Q |
82 |
attccacatcatagcaaattgtccttcgtcgatctacaattgtgtataaacgtcagacaaaccaaaaaaccttcaaagg |
160 |
Q |
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| T |
25951742 |
attccacatcagagcagattttccttcgtcgatatacgattgtgtataatcgccaaacaaacaaaataaccttcaaagg |
25951664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 25951207 - 25951129
Alignment:
| Q |
82 |
attccacatcatagcaaattgtccttcgtcgatctacaattgtgtataaacgtcagacaaaccaaaaaaccttcaaagg |
160 |
Q |
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|||||||||| |||| | |||||||||||||| ||||||||||||||| | || ||||| |||||||||||||||| |
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| T |
25951207 |
attccacatcggagcagactgtccttcgtcgatatacaattgtgtataacctacaagcaaacaaaaaaaccttcaaagg |
25951129 |
T |
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