View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16004_low_15 (Length: 309)
Name: NF16004_low_15
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 6785714 - 6785995
Alignment:
| Q |
20 |
gaggaaggggaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtga |
119 |
Q |
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| T |
6785714 |
gaggaaggagaaggtgctcacttgccgaaaaatgtaagcatattggaatagaggaatattgaagtaacaacaaatatagcgagccatgagatgagagtga |
6785813 |
T |
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| Q |
120 |
gaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaatagtaccaagtttcttcctcctccatagtactatgtcatt |
219 |
Q |
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| T |
6785814 |
ggaagttaaattgacaaacttccaacaacatccatgatgatgttgccacaattagaacaatagcactaagtttcttcctcctccatagtactatgtcatt |
6785913 |
T |
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| Q |
220 |
cattatgtcattgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtctctgct |
301 |
Q |
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| T |
6785914 |
cattatgtcattgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtttctgct |
6785995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 6727878 - 6728070
Alignment:
| Q |
20 |
gaggaaggggaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtga |
119 |
Q |
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| T |
6727878 |
gaggaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtga |
6727977 |
T |
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| Q |
120 |
gaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaatagtaccaagtttcttcctcctccatagtacta |
212 |
Q |
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| T |
6727978 |
gaaagttaaattgataaacttccatcgacacccatgttgttgttgccgcaattagaacaatagtaccaagtttcttcctcctccatagtacta |
6728070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 6760675 - 6760958
Alignment:
| Q |
20 |
gaggaaggggaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtga |
119 |
Q |
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| T |
6760675 |
gaggaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagcgagccatgagatgagagtga |
6760774 |
T |
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| Q |
120 |
gaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaatagtaccaagtttcttcctcctccatag--tacta--tgt |
215 |
Q |
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| T |
6760775 |
ggaagttaaattgacaaacttccaacaacatccatgatgatgttgccacaattagaacaatagtactaagtttcttcctcctccatagtatactacgcgt |
6760874 |
T |
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| Q |
216 |
cattcattatgtcattgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtctctg |
299 |
Q |
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| T |
6760875 |
ccttcaacatgccattgccaccatcttgcgccacaaaattattacatgaagaatgagagggagttgagaaaggttttgtttctg |
6760958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 6730945 - 6731137
Alignment:
| Q |
20 |
gaggaaggggaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtga |
119 |
Q |
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| T |
6730945 |
gaggaaggagaaggtgctcacttgccgaaaaatgtaagcatattggaatagaggaatattgaagtaacaacaaatatagtgatccatgagatgagggtga |
6731044 |
T |
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| Q |
120 |
gaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaatagtaccaagtttcttcctcctccatagtacta |
212 |
Q |
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| T |
6731045 |
ggaatttaaattgataaacttccatcgacacccatgttgctgttgccgcaataagaacaatagtaccaagtttcttcctcctccatagtacta |
6731137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 6731228 - 6731308
Alignment:
| Q |
219 |
tcattatgtcattgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttgtgaaaggttttgtctctg |
299 |
Q |
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| T |
6731228 |
tcatgatgtcattgccaccattttgcgccacaaaataattacccgatgaatgagagggagttgagaaaggttttgtttctg |
6731308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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