View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16004_low_17 (Length: 303)
Name: NF16004_low_17
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 4271353 - 4271094
Alignment:
| Q |
19 |
cttctgattttccctctaatggcataggctttggtgaatctttcagattccaaaaggtcttgcaaggtcaagaaattcttctgtgcccaccctgcggacg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4271353 |
cttctgattttccctctaatggcataggctttggtgaatctttcagattccaaaaggtcttgcaaggtcaagaaattcttctgtgcccaccctacggacg |
4271254 |
T |
|
| Q |
119 |
agcctcgtttgacgaggcccgtggaagtggttgcattggacgttatgatggttatccaatgctcggctccagaaatggatggcctgcacagatgcacgac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4271253 |
agcctcgtttgacgaggcccgtggaagtggttgcattggacgttatgatggttatccaatgctcggctccagaaatggatggcctgcacagatgcacgac |
4271154 |
T |
|
| Q |
219 |
gctgctacacatttgcatgcatctgttacatctggacaagtttcgtctccgtcatctgtg |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4271153 |
gctgctacacatttgcatgcatctgttacatctggacaagtttcgtctccgtcgtctgtg |
4271094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 4271532 - 4271484
Alignment:
| Q |
47 |
ctttggtgaatctttcagattccaaaaggtcttgcaaggtcaagaaatt |
95 |
Q |
| |
|
|||||| ||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
4271532 |
ctttggggaatcattaagattccgaaaggtcttgcaaggtcaagaaatt |
4271484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 34799924 - 34799978
Alignment:
| Q |
45 |
ggctttggtgaatctttcagattccaaaaggtcttgcaaggtcaagaaattcttc |
99 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34799924 |
ggctttggtgaatctttccgattccagaaggtcttgcaaggtcaagaaatacttc |
34799978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 34799738 - 34799767
Alignment:
| Q |
66 |
ttccaaaaggtcttgcaaggtcaagaaatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34799738 |
ttccaaaaggtcttgcaaggtcaagaaatt |
34799767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University