View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16004_low_2 (Length: 552)

Name: NF16004_low_2
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16004_low_2
NF16004_low_2
[»] chr3 (8 HSPs)
chr3 (163-341)||(3214406-3214584)
chr3 (21-166)||(3214237-3214382)
chr3 (337-467)||(3214650-3214780)
chr3 (22-166)||(3210752-3210896)
chr3 (464-537)||(3214994-3215067)
chr3 (47-166)||(3193717-3193835)
chr3 (163-299)||(3193862-3194003)
chr3 (479-531)||(24344802-24344854)
[»] chr7 (2 HSPs)
chr7 (470-537)||(42061188-42061255)
chr7 (500-537)||(16979934-16979971)
[»] chr2 (2 HSPs)
chr2 (474-536)||(40574228-40574290)
chr2 (482-531)||(42251581-42251630)
[»] chr6 (1 HSPs)
chr6 (479-536)||(27082282-27082339)
[»] chr4 (1 HSPs)
chr4 (479-536)||(30694257-30694314)
[»] chr1 (1 HSPs)
chr1 (479-536)||(8001832-8001889)
[»] chr5 (1 HSPs)
chr5 (481-537)||(42491612-42491668)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 6e-94; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 163 - 341
Target Start/End: Original strand, 3214406 - 3214584
Alignment:
Q  163 caccattcacggattcagatgtaactccttcgatcacagctacagtgaaatggtaagaaattcgtatttcgttgatctttagatgtgtaaacttttttca 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3214406 caccattcacggattcagatgtaactccttcgatcacagctacagtgaaatggtaagaaattcgtatttcgttgatctttagatgtgtaaactattttca 3214505  T
Q  263 attttcaaacggtggaaaaagcatgatgatattgaaattgactttcataaacactttgaactaaacttctgtcttactc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3214506 attttcaaacggtggaaaaagcatgatgatattgaaattgactttcataaacactttgaactaaacttctgtcttactc 3214584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 3214237 - 3214382
Alignment:
Q  21 gtttcaatgttatctctcctattattccacatgttcccgcgtcagtgctctttgaaattgacacatcggtttttgggtttctctgcaatggtttcttctc 120  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3214237 gtttcaatgttatctctcctattattccacatgttcccgcatcagtgctcttcgaaattgacacatcggtttttgggtttctctgcaatggtttcttctc 3214336  T
Q  121 atctgtgtgtatctccaaaatcatacgctcaaaccccaacaacacc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3214337 atctgtgtgtatctccaaaatcatacgctcaaaccccaacaacacc 3214382  T

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Target: chr3; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 337 - 467
Target Start/End: Original strand, 3214650 - 3214780
Alignment:
Q  337 tactctgtagtattatttccatttttcatcccttgccctttcgtttttgaacatttcattgtgattaaaaattgagtaaactatccaaatttactaaata 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3214650 tactctgtagtattatttccatttttcatcccttgccctttcgtttttgaacatttcattgtgattaaaaattgagtaaactatccaaatttacgaaata 3214749  T
Q  437 tcaaattgctcaagcaaatggggtagtatta 467  Q
    ||||||||||||||||||||||||| |||||    
T  3214750 tcaaattgctcaagcaaatggggtaatatta 3214780  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 3210752 - 3210896
Alignment:
Q  22 tttcaatgttatctctcctattattccacatgttcccgcgtcagtgctctttgaaattgacacatcggtttttgggtttctctgcaatggtttcttctca 121  Q
    ||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||||| ||||||  |||||||||| ||||||||||| | |||||||    
T  3210752 tttcaatgttatctctcgtattattccacatgttcccgcgttagagctcttcgaaattgtcacatcaatttttgggttcctctgcaatggctccttctca 3210851  T
Q  122 tctgtgtgtatctccaaaatcatacgctcaaaccccaacaacacc 166  Q
    ||||| ||||||||||| ||||  ||| |||||| ||||||||||    
T  3210852 tctgtatgtatctccaacatcacccgcccaaacctcaacaacacc 3210896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 464 - 537
Target Start/End: Original strand, 3214994 - 3215067
Alignment:
Q  464 attatttattaaaaagagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaattttt 537  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  3214994 attatttattaaaaagagaatgctaaagagtgtcccaagggtattggttaaggataaaaaacaagtaaattttt 3215067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 3193717 - 3193835
Alignment:
Q  47 ccacatgttcccgcgtcagtgctctttgaaattgacacatcggtttttgggtttctctgcaat-ggtttcttctcatctgtgtgtatctccaaaatcata 145  Q
    |||||||||||||||| ||||||||| ||||||||||||  | |||||||||| ||||||||| || |||||||||| ||||||||||| ||| ||||      
T  3193717 ccacatgttcccgcgttagtgctcttcgaaattgacaca--gatttttgggttcctctgcaattggcttcttctcatatgtgtgtatctgcaacatcacc 3193814  T
Q  146 cgctcaaaccccaacaacacc 166  Q
    |||||||||||||||||||||    
T  3193815 cgctcaaaccccaacaacacc 3193835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 3193862 - 3194003
Alignment:
Q  163 caccattcacggattcagatgtaactccttcg-----atcacagctacagtgaaatggtaagaaattcgtatttcgttgatctttagatgtgtaaacttt 257  Q
    ||||||||| ||||||||||| ||||||||||     |||||||||||| |||| |||||| || ||||||||||||||||||| | |||||||||||||    
T  3193862 caccattcatggattcagatgcaactccttcgattcgatcacagctacaatgaattggtaacaatttcgtatttcgttgatcttcacatgtgtaaacttt 3193961  T
Q  258 tttcaattttcaaacggtggaaaaagcatgatgatattgaaa 299  Q
    |||| ||||||||||  ||| ||||| |  ||||||||||||    
T  3193962 tttccattttcaaaccatggtaaaagtagcatgatattgaaa 3194003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 531
Target Start/End: Original strand, 24344802 - 24344854
Alignment:
Q  479 gagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaa 531  Q
    ||||||| |||| |||||| || ||||||||||||||||||||||| ||||||    
T  24344802 gagaatgttaaacagtgtctcaggggcattggttaagcataaaaaagaagtaa 24344854  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 42061188 - 42061255
Alignment:
Q  470 tattaaaaagagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaattttt 537  Q
    |||||||| ||||||||||  ||||||| |||| ||||||||||||||   ||||||||||| |||||    
T  42061188 tattaaaaggagaatgctaccgagtgtcacaagagcattggttaagcaactaaaacaagtaagttttt 42061255  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 16979934 - 16979971
Alignment:
Q  500 aagggcattggttaagcataaaaaacaagtaaattttt 537  Q
    |||||||||||||||||||  |||||||||||||||||    
T  16979934 aagggcattggttaagcatccaaaacaagtaaattttt 16979971  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 536
Target Start/End: Complemental strand, 40574290 - 40574228
Alignment:
Q  474 aaaaagagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaatttt 536  Q
    |||| |||||||||||  |||| |||||||||| |||||||||||  |||||||||| |||||    
T  40574290 aaaaggagaatgctaaccagtgccccaagggcaatggttaagcatccaaaacaagtacatttt 40574228  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 42251581 - 42251630
Alignment:
Q  482 aatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaa 531  Q
    ||||||||  |||||| ||||||||||||||||||||  |||||||||||    
T  42251581 aatgctaactagtgtctcaagggcattggttaagcatccaaaacaagtaa 42251630  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 27082282 - 27082339
Alignment:
Q  479 gagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaatttt 536  Q
    |||||||||||| |||| ||||||| |||||||||| ||   ||||||||||||||||    
T  27082282 gagaatgctaaatagtgccccaaggacattggttaaacaaccaaaacaagtaaatttt 27082339  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Original strand, 30694257 - 30694314
Alignment:
Q  479 gagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaatttt 536  Q
    ||||||||||||||||| |||||||| |||||||| |||   ||||||||||| ||||    
T  30694257 gagaatgctaaagagtgccccaagggaattggttatgcaaccaaaacaagtaagtttt 30694314  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 536
Target Start/End: Complemental strand, 8001889 - 8001832
Alignment:
Q  479 gagaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaatttt 536  Q
    ||||||||||| ||||| || |||| || |||||||||||  ||||||||||||||||    
T  8001889 gagaatgctaacgagtgccctaaggccaatggttaagcatctaaaacaagtaaatttt 8001832  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 42491612 - 42491668
Alignment:
Q  481 gaatgctaaagagtgtcccaagggcattggttaagcataaaaaacaagtaaattttt 537  Q
    |||||||||| |||||| ||| ||||||||||||||||  |||||||| || |||||    
T  42491612 gaatgctaaacagtgtctcaaaggcattggttaagcatccaaaacaagaaagttttt 42491668  T

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