View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16004_low_22 (Length: 238)
Name: NF16004_low_22
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42677259 - 42677025
Alignment:
| Q |
1 |
atctcttgatggttccaaattgtccaaaataagcttccgccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtatt |
100 |
Q |
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| T |
42677259 |
atctcttgatggttccaaattgtccaaaataagctttcgccatctccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaagtatt |
42677160 |
T |
|
| Q |
101 |
ctccaatggtttgcggctaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggaaaaaattaaatggcaatggctttataccacacgaaa |
200 |
Q |
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| T |
42677159 |
ctccaatggtttgcgactaggaccagcttccaacgacaaaaaatcagcaccatgctcaaatggatagaattaaatggcaatggctttataccacacgaaa |
42677060 |
T |
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| Q |
201 |
gagatctgattacactaaaacatattcgctttgat |
235 |
Q |
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| T |
42677059 |
gagatctgattacactaaaacatattcgctttgat |
42677025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 48969712 - 48969784
Alignment:
| Q |
40 |
ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtattctccaatggttt |
112 |
Q |
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| T |
48969712 |
ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaagaattctccaattgttt |
48969784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48969547 - 48969581
Alignment:
| Q |
1 |
atctcttgatggttccaaattgtccaaaataagct |
35 |
Q |
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| T |
48969547 |
atctcttgatggttccaaattgtccaaaataagct |
48969581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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