View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16004_low_4 (Length: 484)
Name: NF16004_low_4
Description: NF16004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16004_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 36715212 - 36715666
Alignment:
| Q |
16 |
ctgacatcaattgggaaggacttagttttagtctgactcaaacagattacatgcatgtcatgaaatgcacaaaaggagaaaagttttctcaaggatccct |
115 |
Q |
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| T |
36715212 |
ctgacatcaattgggaaggacttagttttagtctgactcaaacagattacatgcatgtcatgaaatgcacaaaaggagaaaagttttctcaaggatccct |
36715311 |
T |
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| Q |
116 |
cattcgctatggaaacattgagataagcccggctgctggtatcataaactatggacaggttaaaagtgcacaatatatgtttgttaaaatacctactgaa |
215 |
Q |
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| T |
36715312 |
cattcgctacggaaacattgagataagcccggctgctggtatcataaactatggacaggttaaaagtgcacaatatatgtttgttaaaatacctagtgaa |
36715411 |
T |
|
| Q |
216 |
agatgatttatattgttggaaaatgtgattgatgcagtcaaatttgcgattgtaataccgtgacagagacctcaaaattcgttatattttgcagtcacaa |
315 |
Q |
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| T |
36715412 |
agatgatttatattgttggaaaatgtgattgatgcagtcaaatttgcgattgtaataccgtgacagagacctcaaaattcgttatattttgcagtcacaa |
36715511 |
T |
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| Q |
316 |
ttacgattgtagactgcaatttaaaatcatgtcttgttctactttatacataataagacttgtatgtttactgctaaaaaatgaaagttagttgtgttac |
415 |
Q |
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| T |
36715512 |
ttacggttgtagactgcaatttaaattcatgtcttgtactactttatacataataagacttatatgtttgctgctaaaaaatgaaagttagttgtgttac |
36715611 |
T |
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| Q |
416 |
atcagttattgtcaatgatatagagtgtgtttgtatgcgcgcacacatacaagtt |
470 |
Q |
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| T |
36715612 |
atcagttattgtcaatgatatagagtgtgtttgcacgcgcgcgcacacacaagtt |
36715666 |
T |
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